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Report for CCDS13002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13002.1 Public Homo sapiens 20 TBC1D20 24 110 108 CCDS HistoryNCBI Gene:128637Re-query CCDS DB by CCDS ID:13002.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354200.5 ENSP00000346139.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354200.5Link to Ensembl Protein Viewer:ENSP00000346139.4Re-query CCDS DB by Nucleotide ID:ENST00000354200Re-query CCDS DB by Protein ID:ENSP00000346139
Original member Current member EBI ENST00000461304.5 ENSP00000432280.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461304.5Link to Ensembl Protein Viewer:ENSP00000432280.1Re-query CCDS DB by Nucleotide ID:ENST00000461304Re-query CCDS DB by Protein ID:ENSP00000432280
Original member Current member EBI ENST00000679741.1 ENSP00000504904.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679741.1Link to Ensembl Protein Viewer:ENSP00000504904.1Re-query CCDS DB by Nucleotide ID:ENST00000679741Re-query CCDS DB by Protein ID:ENSP00000504904
Original member Current member EBI ENST00000680106.1 ENSP00000505500.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680106.1Link to Ensembl Protein Viewer:ENSP00000505500.1Re-query CCDS DB by Nucleotide ID:ENST00000680106Re-query CCDS DB by Protein ID:ENSP00000505500
Original member Current member EBI ENST00000681539.1 ENSP00000505557.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681539.1Link to Ensembl Protein Viewer:ENSP00000505557.1Re-query CCDS DB by Nucleotide ID:ENST00000681539Re-query CCDS DB by Protein ID:ENSP00000505557
Original member Current member EBI ENST00000680792.1 ENSP00000506012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680792.1Link to Ensembl Protein Viewer:ENSP00000506012.1Re-query CCDS DB by Nucleotide ID:ENST00000680792Re-query CCDS DB by Protein ID:ENSP00000506012
Original member Current member EBI ENST00000681742.1 ENSP00000506122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681742.1Link to Ensembl Protein Viewer:ENSP00000506122.1Re-query CCDS DB by Nucleotide ID:ENST00000681742Re-query CCDS DB by Protein ID:ENSP00000506122
Original member Current member EBI ENST00000681636.1 ENSP00000506155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681636.1Link to Ensembl Protein Viewer:ENSP00000506155.1Re-query CCDS DB by Nucleotide ID:ENST00000681636Re-query CCDS DB by Protein ID:ENSP00000506155
Original member Current member EBI ENST00000680284.1 ENSP00000506231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680284.1Link to Ensembl Protein Viewer:ENSP00000506231.1Re-query CCDS DB by Nucleotide ID:ENST00000680284Re-query CCDS DB by Protein ID:ENSP00000506231
Original member Current member EBI ENST00000679944.1 ENSP00000506278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679944.1Link to Ensembl Protein Viewer:ENSP00000506278.1Re-query CCDS DB by Nucleotide ID:ENST00000679944Re-query CCDS DB by Protein ID:ENSP00000506278
Original member Current member NCBI NM_144628.4 NP_653229.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144628.4Link to Protein Sequence:NP_653229.1Re-query CCDS DB by Nucleotide ID:NM_144628Re-query CCDS DB by Protein ID:NP_653229Link to BLAST:NP_653229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653229.1 403 Q96BZ9-1 403 100% 0 0

Chromosomal Locations for CCDS 13002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 438586 438841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 439108 439295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 440248 440389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 441588 441689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 441857 442043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 445050 445130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 447889 448074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 462336 462405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCCCTCCGGAGTGCGCAGGGCGACGGCCCCACCTCCGGCCACTGGGACGGCGGCGCGGAGAAGGCAG
ACTTTAACGCCAAAAGGAAAAAGAAAGTGGCAGAGATACACCAGGCTCTGAACAGTGATCCCACTGATGT
GGCTGCCCTTAGACGCATGGCTATCAGTGAAGGAGGGCTCCTGACTGATGAGATCAGACGAAAAGTGTGG
CCCAAGCTCCTCAATGTCAATGCCAATGACCCACCTCCTATATCAGGGAAGAACCTACGGCAGATGAGCA
AGGACTACCAACAAGTGTTGCTGGACGTCCGGCGGTCATTGCGGCGGTTCCCTCCTGGCATGCCAGAGGA
ACAGAGAGAAGGGCTCCAGGAAGAACTGATTGACATCATCCTCCTCATCTTGGAGCGCAACCCTCAGCTG
CACTACTACCAGGGCTACCATGACATTGTGGTCACATTTCTGCTGGTGGTAGGCGAGAGGCTGGCAACAT
CCCTGGTAGAAAAATTATCTACCCACCACCTCAGGGATTTTATGGATCCAACAATGGACAACACCAAGCA
TATATTAAACTATCTGATGCCCATCATTGACCAGGTGAATCCAGAGCTCCATGACTTCATGCAGAGTGCT
GAGGTAGGGACCATCTTTGCCCTCAGCTGGCTCATCACCTGGTTTGGGCATGTCCTGTCTGACTTCAGGC
ACGTCGTGCGGTTATATGACTTCTTCCTGGCCTGCCACCCACTGATGCCGATTTACTTTGCAGCCGTGAT
TGTGTTGTATCGCGAGCAGGAAGTCCTGGACTGTGACTGTGACATGGCCTCGGTCCACCACCTGTTGTCC
CAGATCCCTCAGGACTTGCCCTATGAGACACTGATCAGCAGAGCAGGAGACCTTTTTGTTCAGTTTCCCC
CATCCGAACTTGCTCGGGAGGCCGCTGCCCAACAGCAAGCTGAGAGGACGGCAGCCTCTACTTTCAAAGA
CTTTGAGCTGGCATCAGCCCAGCAGAGGCCTGATATGGTGCTGCGGCAGCGGTTTCGGGGACTTCTGCGG
CCTGAAGATCGAACAAAAGATGTCCTGACCAAGCCAAGGACCAACCGCTTTGTGAAATTGGCAGTGATGG
GGCTGACAGTGGCACTTGGAGCGGCTGCACTGGCTGTGGTGAAAAGTGCCCTGGAATGGGCCCCTAAGTT
TCAGCTGCAGCTGTTTCCCTGA

Translation (403 aa):
MALRSAQGDGPTSGHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVW
PKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQL
HYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSA
EVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLS
QIPQDLPYETLISRAGDLFVQFPPSELAREAAAQQQAERTAASTFKDFELASAQQRPDMVLRQRFRGLLR
PEDRTKDVLTKPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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