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Report for CCDS15254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15254.1 Public Mus musculus 1 Cxcr4 23 108 98 CCDS HistoryNCBI Gene:12767Re-query CCDS DB by CCDS ID:15254.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052172.6 ENSMUSP00000053489.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052172.6Link to Ensembl Protein Viewer:ENSMUSP00000053489.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052172Re-query CCDS DB by Protein ID:ENSMUSP00000053489
Original member NCBI NM_009911.3 NP_034041.2 Updated not alive Link to Nucleotide Sequence:NM_009911.3Link to Protein Sequence:NP_034041.2Re-query CCDS DB by Nucleotide ID:NM_009911Re-query CCDS DB by Protein ID:NP_034041
Current member NCBI NM_009911.4 NP_034041.2 Accepted alive Link to Nucleotide Sequence:NM_009911.4Link to Protein Sequence:NP_034041.2Re-query CCDS DB by Nucleotide ID:NM_009911Re-query CCDS DB by Protein ID:NP_034041Link to BLAST:NP_034041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034041.2 359 P70658-1 359 99.7215% 0 1

Chromosomal Locations for CCDS 15254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 128588843 128589901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128592189 128592209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGAACCGATCAGTGTGAGTATATACACTTCTGATAACTACTCTGAAGAAGTGGGTTCTGGAGACTATG
ACTCCAACAAGGAACCCTGCTTCCGGGATGAAAACGTCCATTTCAATAGGATCTTCCTGCCCACCATCTA
CTTCATCATCTTCTTGACTGGCATAGTCGGCAATGGATTGGTGATCCTGGTCATGGGTTACCAGAAGAAG
CTAAGGAGCATGACGGACAAGTACCGGCTGCACCTGTCAGTGGCTGACCTCCTCTTTGTCATCACACTCC
CCTTCTGGGCAGTTGATGCCATGGCTGACTGGTACTTTGGGAAATTTTTGTGTAAGGCTGTCCATATCAT
CTACACTGTCAACCTCTACAGCAGCGTTCTCATCCTGGCCTTCATCAGCCTGGACCGGTACCTCGCTATT
GTCCACGCCACCAACAGTCAGAGGCCAAGGAAACTGCTGGCTGAAAAGGCAGTCTATGTGGGCGTCTGGA
TCCCAGCCCTCCTCCTGACTATACCTGACTTCATCTTTGCCGACGTCAGCCAGGGGGACATCAGTCAGGG
GGATGACAGGTACATCTGTGACCGCCTTTACCCCGATAGCCTGTGGATGGTGGTGTTTCAATTCCAGCAT
ATAATGGTGGGTCTCGTCCTGCCCGGCATCGTCATCCTCTCCTGTTACTGCATCATCATCTCTAAGCTGT
CACACTCCAAGGGCCACCAGAAGCGCAAGGCCCTCAAGACGACAGTCATCCTCATCCTAGCTTTCTTTGC
CTGCTGGCTGCCATATTATGTGGGGATCAGCATCGACTCCTTCATCCTTTTGGGGGTCATCAAGCAAGGA
TGTGACTTCGAGAGCATCGTGCACAAGTGGATCTCCATCACAGAGGCCCTCGCCTTCTTCCACTGTTGCC
TGAACCCCATCCTCTATGCCTTCCTCGGGGCCAAGTTCAAAAGCTCTGCCCAGCATGCACTCAACTCCAT
GAGCAGAGGCTCCAGCCTCAAGATCCTTTCCAAAGGAAAGCGGGGTGGACACTCTTCCGTCTCCACGGAG
TCAGAATCCTCCAGTTTTCACTCCAGCTAA

Translation (359 aa):
MEPISVSIYTSDNYSEEVGSGDYDSNKEPCFRDENVHFNRIFLPTIYFIIFLTGIVGNGLVILVMGYQKK
LRSMTDKYRLHLSVADLLFVITLPFWAVDAMADWYFGKFLCKAVHIIYTVNLYSSVLILAFISLDRYLAI
VHATNSQRPRKLLAEKAVYVGVWIPALLLTIPDFIFADVSQGDISQGDDRYICDRLYPDSLWMVVFQFQH
IMVGLVLPGIVILSCYCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYVGISIDSFILLGVIKQG
CDFESIVHKWISITEALAFFHCCLNPILYAFLGAKFKSSAQHALNSMSRGSSLKILSKGKRGGHSSVSTE
SESSSFHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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