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Report for CCDS51386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51386.1 Public Mus musculus 4 Car6 23 108 98 CCDS HistoryNCBI Gene:12353Re-query CCDS DB by CCDS ID:51386.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030817.4 ENSMUSP00000030817.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030817.4Link to Ensembl Protein Viewer:ENSMUSP00000030817.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030817Re-query CCDS DB by Protein ID:ENSMUSP00000030817
Original member Current member NCBI NM_009802.2 NP_033932.2 Accepted alive Link to Nucleotide Sequence:NM_009802.2Link to Protein Sequence:NP_033932.2Re-query CCDS DB by Nucleotide ID:NM_009802Re-query CCDS DB by Protein ID:NP_033932Link to BLAST:NP_033932.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033932.2 317 P18761 317 100% 0 0

Chromosomal Locations for CCDS 51386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150187405 150187508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150189121 150189244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150192475 150192632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150193708 150193777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150196056 150196148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150197318 150197466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150198099 150198281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150201037 150201109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGGGCCCTGGTGAGCGTGGTGTCCCTGTTCTTCCTGGGCATCCAGGCCCACAGTGATTGGAGCTATT
CAGGGGATGATGGCGTGGGAGAAAGTCAGTGGTCTGAGCAGTATCCTTCCTGCGGCGGGGAAAGGCAGTC
GCCCATCGACGTGAAGACGGAGGAGGTGATGTTCAATCCCTCCTTGAAGCCCCTGAGCTTGGTGAACTAT
GAGAAGGAGAACCTGGAGTTCACTATGACTAACAACGGACACACAGTATCGATCGATCTGCCGCCCTCCA
TGTACCTTGAAACCTCTGACGGCACTGAGTTCATCTCAAAGGCCTTTCACTTTCACTGGGGGGGTCGGGA
CTGGGAACTCAGCGGCTCTGAACACACCATTGATGGGATCAGGAGTATAATGGAGGCTCACTTTGTTCAC
TTCAATAAGGAATACGGGACCTATGAGAATGCCAAGGATCAAAAAAACGGCCTAGCTGTGTTAGCCGTCT
TGTTTAAGATTGACGAGTATGCCGAAAACACTTACTACAGCGACATCATTTCTGCCTTGAAGAACATCGA
GAAGCCAGGAGAAACTACAACTCTGAAAGACACGACCATTAGGAACTTGTTGCCTAAGGACGTCCACCAC
TATTACACCTACCCAGGCTCGCTCACCACACCCCCCTGCACAGAGAATGTCCAGTGGTTTGTGCTTAGAG
ACAAAGTCACTTTGTCCAAGGCCCAGGTGGTGACCATAGAAAACTCTGTTATGGATCACAACAACAACAC
CATTCAAAATGGTTACCGCAGCACACAGCCCAACAACCACAGGGTGGTGGAAGCCAATTTCCTGAACGTC
CAGGATATGTACTCTTCGTACCACCTTTACCTAAAAAACATGCAGAAGGAGATTCTACAACCTAAGAAAC
AGAAGAAAACAAAGAAGAACCGGCACTTTTGGAGCCGGAAATGA

Translation (317 aa):
MRALVSVVSLFFLGIQAHSDWSYSGDDGVGESQWSEQYPSCGGERQSPIDVKTEEVMFNPSLKPLSLVNY
EKENLEFTMTNNGHTVSIDLPPSMYLETSDGTEFISKAFHFHWGGRDWELSGSEHTIDGIRSIMEAHFVH
FNKEYGTYENAKDQKNGLAVLAVLFKIDEYAENTYYSDIISALKNIEKPGETTTLKDTTIRNLLPKDVHH
YYTYPGSLTTPPCTENVQWFVLRDKVTLSKAQVVTIENSVMDHNNNTIQNGYRSTQPNNHRVVEANFLNV
QDMYSSYHLYLKNMQKEILQPKKQKKTKKNRHFWSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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