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Report for CCDS31405.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31405.2 Public Homo sapiens 11 OR56A1 24 110 108 CCDS HistoryNCBI Gene:120796Re-query CCDS DB by CCDS ID:31405.2See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31405.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641900.1 ENSP00000493047.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641900.1Link to Ensembl Protein Viewer:ENSP00000493047.1Re-query CCDS DB by Nucleotide ID:ENST00000641900Re-query CCDS DB by Protein ID:ENSP00000493047
Original member Current member EBI ENST00000641423.1 ENSP00000493266.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641423.1Link to Ensembl Protein Viewer:ENSP00000493266.1Re-query CCDS DB by Nucleotide ID:ENST00000641423Re-query CCDS DB by Protein ID:ENSP00000493266
Original member Current member EBI ENST00000641938.1 ENSP00000493321.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641938.1Link to Ensembl Protein Viewer:ENSP00000493321.1Re-query CCDS DB by Nucleotide ID:ENST00000641938Re-query CCDS DB by Protein ID:ENSP00000493321
Original member Current member NCBI NM_001001917.5 NP_001001917.3 Accepted alive Link to Nucleotide Sequence:NM_001001917.5Link to Protein Sequence:NP_001001917.3Re-query CCDS DB by Nucleotide ID:NM_001001917Re-query CCDS DB by Protein ID:NP_001001917Link to BLAST:NP_001001917.3
Original member Current member NCBI NM_001388488.1 NP_001375417.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388488.1Link to Protein Sequence:NP_001375417.1Re-query CCDS DB by Nucleotide ID:NM_001388488Re-query CCDS DB by Protein ID:NP_001375417Link to BLAST:NP_001375417.1

Chromosomal Locations for CCDS 31405.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6026748 6027692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCGTCACCCAGCAACAGCTCCACTGTCCCAGTCTCTGAATTCCTCCTCATCTGCTTCCCCAACTTCC
AGAGTTGGCAGCACTGGCTCTCCCTGCCCCTCAGCCTTCTCTTCCTCCTGGCCATGGGAGCTAACACCAC
CCTCCTGATCACCATCCAGCTGGAGGCCTCTCTGCACCAGCCCCTGTACTACCTGCTCAGCCTCCTCTCC
CTGCTGGACATCGTGCTCTGCCTCACCGTCATCCCCAAGGTCCTGGCCATCTTCTGGTATGATCTTAGGT
CGATCAGCTTCCCTGCCTGCTTCCTCCAGATGTTCATCATGAACAGTTTCCTCCCCATGGAGTCCTGCAC
GTTTATGGTCATGGCCTATGACCGTTATGTGGCCATCTGCCACCCACTGCGGTACCCATCCATCATCACT
AATCAATTTGTGGCCAAAGCTAGTGTCTTCATTGTGGTGCGGAATGCGCTTCTTACTGCACCCATTCCTA
TCCTCACTTCCCTGCTCCATTACTGTGGGGAAAATGTCATTGAGAACTGCATCTGTGCCAACTTGTCTGT
GTCCAGGCTCTCCTGTGATAATTTCACCCTTAACAGAATCTACCAATTTGTGGCTGGTTGGACCTTGCTG
GGCTCAGATTTATTCCTCATCTTCCTCTCTTACACCTTCATTCTAAGAGCTGTGCTTAGATTCAAAGCAG
AGGGGGCGGCAGTGAAGGCCCTGAGCACATGTGGCTCCCACTTCATCCTCATTCTTTTCTTCAGCACCAT
ACTGCTGGTTGTGGTGTTGACAAACGTGGCCAGAAAGAAGGTCCCCATGGACATCCTGATCCTGCTGAAC
GTCCTTCATCACCTTATTCCTCCTGCATTGAACCCTATTGTGTATGGGGTTCGGACCAAAGAGATAAAAC
AGGGAATTCAGAAGTTACTGCAGAGAGGGAGGTGA

Translation (314 aa):
MASPSNSSTVPVSEFLLICFPNFQSWQHWLSLPLSLLFLLAMGANTTLLITIQLEASLHQPLYYLLSLLS
LLDIVLCLTVIPKVLAIFWYDLRSISFPACFLQMFIMNSFLPMESCTFMVMAYDRYVAICHPLRYPSIIT
NQFVAKASVFIVVRNALLTAPIPILTSLLHYCGENVIENCICANLSVSRLSCDNFTLNRIYQFVAGWTLL
GSDLFLIFLSYTFILRAVLRFKAEGAAVKALSTCGSHFILILFFSTILLVVVLTNVARKKVPMDILILLN
VLHHLIPPALNPIVYGVRTKEIKQGIQKLLQRGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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