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Report for CCDS5824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5824.1 Public Homo sapiens 7 TSGA13 24 110 108 CCDS HistoryNCBI Gene:114960Re-query CCDS DB by CCDS ID:5824.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356588.8 ENSP00000348996.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356588.8Link to Ensembl Protein Viewer:ENSP00000348996.3Re-query CCDS DB by Nucleotide ID:ENST00000356588Re-query CCDS DB by Protein ID:ENSP00000348996
Original member Current member EBI ENST00000456951.5 ENSP00000406047.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456951.5Link to Ensembl Protein Viewer:ENSP00000406047.1Re-query CCDS DB by Nucleotide ID:ENST00000456951Re-query CCDS DB by Protein ID:ENSP00000406047
Original member Current member NCBI NM_001304968.2 NP_001291897.1 Accepted alive Link to Nucleotide Sequence:NM_001304968.2Link to Protein Sequence:NP_001291897.1Re-query CCDS DB by Nucleotide ID:NM_001304968Re-query CCDS DB by Protein ID:NP_001291897Link to BLAST:NP_001291897.1
Original member Current member NCBI NM_052933.4 NP_443165.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052933.4Link to Protein Sequence:NP_443165.1Re-query CCDS DB by Nucleotide ID:NM_052933Re-query CCDS DB by Protein ID:NP_443165Link to BLAST:NP_443165.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291897.1 275 Q96PP4 275 100% 0 0
NP_443165.1 275 Q96PP4 275 100% 0 0

Chromosomal Locations for CCDS 5824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130669014 130669183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130671661 130671788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130672734 130672876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130679155 130679367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130680946 130681017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130683594 130683672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130685188 130685210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAGCCAAAAGAGACAAACCAAGTTTCAAAATGGCAAATCAAAGACTTCAGAAAATAGCTCAGCTAAAC
GTGAGAAAGGAATGGTTGTCAATAGCAAAGAGATTTCTGATGCAGTCGGGCAATCAAAATTTGTTCTAGA
GAACCTTCGGCATTACACAGTCCATCCAAATTTGGCCCAGTACTATAAGCCTTTGAAGGCCACTGCCCTG
CAGAAATTCCTGGCTCAAAACAGGAAAAACACCAGCTTCATGTTAAAAGTAACACAGTATGACCAGGATA
AGACGTTACTGATTATGACCAACAACCCACCTCCCTGCTCAATCACCCAGCAAGACAAGGAGAGTGCATC
AAAATATTTTTCCAAGGAGTTACTGCTCAAGGTCATGGAAAGTCATCATCAGCACAAACCCACTGAGAAC
CTCTGGCTGCCCCGCATGCCTCAGAAAAAAAAGTTAAGATCTAAGCTGAAACCAATCTTCCCTTTGATAC
TGTCGGATGATCCCACATCCAAGCGAGAACAATGGTTTAGGTTTTCCACTGACAATGATTTCAAGAGCGA
AGGGAAGTATTCAAAAGTCTACGCTTTGAGGACACAGAAGAAAATGTACCCTCAGCTCACCTTTGCTCCA
GTCCATGAGAGAGATATGAGGAAAGATGCTTCCAAGAAGTCAGCGAGTGAAAGGCCAATTTCCAAAGTGA
TTCGGGAACCACTGACACTCGCATCGCTCTTGGAAGACATGCCCACCAGAACCGCGCCCGGGGAGAGCGC
CTTCCGCAACGGGAGGGCCCCGCAGTGGATTATCAAAAAGGCCACGGTCATCGGGTGA

Translation (275 aa):
MSQKRQTKFQNGKSKTSENSSAKREKGMVVNSKEISDAVGQSKFVLENLRHYTVHPNLAQYYKPLKATAL
QKFLAQNRKNTSFMLKVTQYDQDKTLLIMTNNPPPCSITQQDKESASKYFSKELLLKVMESHHQHKPTEN
LWLPRMPQKKKLRSKLKPIFPLILSDDPTSKREQWFRFSTDNDFKSEGKYSKVYALRTQKKMYPQLTFAP
VHERDMRKDASKKSASERPISKVIREPLTLASLLEDMPTRTAPGESAFRNGRAPQWIIKKATVIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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