NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4405.1 Public Homo sapiens 5 GPRIN1 24 110 108 CCDS HistoryNCBI Gene:114787Re-query CCDS DB by CCDS ID:4405.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303991.5 ENSP00000305839.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303991.5Link to Ensembl Protein Viewer:ENSP00000305839.4Re-query CCDS DB by Nucleotide ID:ENST00000303991Re-query CCDS DB by Protein ID:ENSP00000305839
Original member Current member NCBI NM_052899.3 NP_443131.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052899.3Link to Protein Sequence:NP_443131.2Re-query CCDS DB by Nucleotide ID:NM_052899Re-query CCDS DB by Protein ID:NP_443131Link to BLAST:NP_443131.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443131.2 1008 Q7Z2K8-1 1008 100% 0 0

Chromosomal Locations for CCDS 4405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176596808 176599834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3027 nt):
ATGGACACTGCTGAAGACCCGGCCTGGCTCCAGCTGCTTCAAAAGGATTCCAGCCCCCCAGGACCCCGAC
CCACAGCCTTCTTCTGCCCACAGGATGGGAGCCTGGGGGCTGGCAGCTCGGCTATGAGGGATTACTGCCC
CTCCCAGCAAAAGGCAAGCCCTGCACCCCCCAGGCACACCCCTGACCAAAGCCCAGGCATGGAGTCTAGA
CACAGAAGCCCCAGTGGGGCTGGGGAAGGGGCCTCCTGCTCTGACGGCCCCAGAGGGAGCCTGGCCTGCC
CCTCCCCAACCTGCTTCTCTCCCCAGGAGTCACCCTCCAAGGAGACATTGGAGGCACATGGAGCCTCCAT
CTCAGGGACACCAGAAGCCACCACGTCTGGGAAGCCAGAGCCTGTGTCCTCCGTGAAAACTGAGCCCAAA
TCCTCAGATGACAGAAATCCCATGTTCTTAGAGAAGATGGATTTCAAGTCCTCAAAGCAGGCCGATTCCA
CTTCCATAGGAAAGGAGGATCCTGGGTCCTCACGGAAGGCAGATCCCATGTTTACAGGAAAGGCAGAGCC
TGAAATCTTGGGAAAGGGGGATCCTGTGGCTCCTGGAAGGATGGATCCCATGACTGTAAGAAAGGAAGAT
CTTGGATCCCTGGGAAAAGTAGATCCTTTGTGCTCCAGCAAGACGTATACAGTGTCACCGAGGAAGGAGG
ATCCTGGGTCTTTGAGAAAGGTGGATCCTGTGTCCTCAGACAAAGTGGACCCTGTATTCCCAAGAAAGGA
GGAGCCCAGGTATTCAGGAAAAGAGCATCCTGTGTCCTCAGAAAAGGTCGCTCCTACATCTGCAGAAAAG
GTAGATCTTGTATTGTCGGGAAAGAGAGATCCTGGGCCCTCGGGAAAGGCAGATCCCATGCCCTTGGAAA
GCATGGATTCTGCGTCCACAGGAAAGACAGAGCCGGGGCTCCTGGGCAAGCTGATTCCAGGCTCATCAGG
CAAGAATGGGCCTGTATCCTCTGGGACCGGGGCTCCTGGGTCCTTGGGAAGGCTGGATCCCACATGCTTG
GGGATGGCAGATCCCGCATCTGTGGGAAATGTAGAAACTGTGCCTGCCACAAAAGAGGACTCCCGGTTCC
TGGGAAAGATGGACCCTGCCTCCTCAGGAGAGGGGCGTCCTGTGTCTGGCCACACGGATACTACGGCTTC
AGCAAAGACAGATCTCACATCTTTGAAAAATGTGGATCCCATGTCTTCAGGCAAGGTGGATCCAGTTTCT
CTGGGAAAGATGGACCCCATGTGCTCAGGAAAGCCAGAGCTCTTGTCTCCTGGACAGGCAGAGCGTGTGT
CTGTGGGAAAGGCAGGAACTGTATCCCCAGGAAAAGAGGACCCGGTGTCCTCCAGAAGGGAGGACCCCAT
ATCTGCTGGAAGTAGAAAGACATCATCTGAAAAAGTGAATCCTGAGTCTTCAGGAAAGACAAACCCTGTG
TCTTCAGGTCCAGGCGATCCCAGGTCCTTGGGGACAGCAGGTCCCCCATCTGCAGTAAAGGCTGAGCCAG
CGACGGGGGGAAAAGGAGATCCCCTGTCCTCGGAGAAGGCAGGTCTGGTGGCCTCTGGAAAGGCGGCTCC
CACAGCCTCAGGGAAGGCCGAGCCCCTCGCGGTGGGCAAGGAGGACCCTGTGAGCAAGGGAAAGGCAGAC
GCTGGCCCCTCTGGACAAGGGGACTCTGTGTCTATAGGTAAAGTGGTCTCAACTCCAGGAAAAACAGTCC
CGGTGCCCTCGGGGAAGGTGGATCCCGTGTCCCTGGGAAAAGCAGAAGCTATCCCAGAGGGAAAAGTGGG
TTCTCTGCCTCTAGAGAAGGGGAGTCCTGTTACCACCACAAAGGCGGATCCCAGGGCCTCGGGGAAAGCA
CAGCCGCAGTCTGGTGGCAAAGCAGAAACAAAGCTCCCTGGGCAAGAGGGCGCTGCAGCACCAGGGGAAG
CAGGGGCTGTGTGTTTGAAAAAGGAGACACCACAGGCCTCAGAGAAGGTGGATCCTGGATCCTGCAGAAA
AGCAGAGCCCCTTGCCTCAGGGAAGGGAGAGCCTGTGTCCCTGGGGAAAGCCGACTCTGCACCTTCCAGA
AAAACGGAGTCCCCATCCTTGGGGAAGGTGGTCCCCCTGAGTCTGGAGAAGACCAAGCCGTCCTCCTCCT
CCAGGCAGTTAGACCGCAAAGCCCTCGGCTCAGCCCGGTCTCCCGAGGGTGCCAGGGGCAGTGAAGGCCG
CGTGGAGCCGAAGGCCGAGCCCGTGTCCAGCACCGAGGCCTCCAGTCTCGGCCAGAAAGACCTGGAAGCC
GCTGGGGCCGAGAGAAGCCCCTGCCCAGAGGCCGCAGCGCCCCCGCCGGGGCCGCGGACTCGCGACAACT
TCACCAAGGCGCCGTCGTGGGAGGCGAGCGCCCCGCCGCCGCCGCGCGAGGACGCGGGCACTCAGGCGGG
CGCGCAGGCCTGCGTCTCAGTGGCCGTGAGCCCCATGTCTCCGCAGGACGGCGCTGGGGGCTCGGCCTTC
AGCTTCCAGGCGGCGCCGCGCGCGCCCAGCCCGCCCTCGCGCCGAGATGCGGGCCTGCAGGTGTCGCTGG
GCGCCGCCGAGACGCGCTCCGTGGCCACTGGGCCCATGACACCTCAAGCCGCCGCGCCGCCCGCCTTCCC
CGAAGTGCGGGTGCGGCCCGGCTCAGCGCTGGCGGCCGCTGTAGCGCCCCCGGAGCCGGCTGAGCCCGTG
CGAGACGTGAGCTGGGACGAGAAGGGCATGACGTGGGAGGTATACGGCGCCGCCATGGAGGTGGAGGTGC
TGGGCATGGCCATCCAGAAGCATCTGGAGCGACAGATCGAGGAGCACGGCCGCCAAGGGGCGCCCGCGCC
GCCGCCCGCCGCCCGTGCCGGCCCCGGCCGTTCGGGCTCGGTGCGCACCGCGCCCCCAGATGGCGCCGCC
AAGCGTCCGCCCGGCCTGTTCCGCGCGCTGCTGCAGAGTGTGCGCCGGCCGCGGTGCTGCTCGCGGGCGG
GACCCACGGCCGAGTGA

Translation (1008 aa):
MDTAEDPAWLQLLQKDSSPPGPRPTAFFCPQDGSLGAGSSAMRDYCPSQQKASPAPPRHTPDQSPGMESR
HRSPSGAGEGASCSDGPRGSLACPSPTCFSPQESPSKETLEAHGASISGTPEATTSGKPEPVSSVKTEPK
SSDDRNPMFLEKMDFKSSKQADSTSIGKEDPGSSRKADPMFTGKAEPEILGKGDPVAPGRMDPMTVRKED
LGSLGKVDPLCSSKTYTVSPRKEDPGSLRKVDPVSSDKVDPVFPRKEEPRYSGKEHPVSSEKVAPTSAEK
VDLVLSGKRDPGPSGKADPMPLESMDSASTGKTEPGLLGKLIPGSSGKNGPVSSGTGAPGSLGRLDPTCL
GMADPASVGNVETVPATKEDSRFLGKMDPASSGEGRPVSGHTDTTASAKTDLTSLKNVDPMSSGKVDPVS
LGKMDPMCSGKPELLSPGQAERVSVGKAGTVSPGKEDPVSSRREDPISAGSRKTSSEKVNPESSGKTNPV
SSGPGDPRSLGTAGPPSAVKAEPATGGKGDPLSSEKAGLVASGKAAPTASGKAEPLAVGKEDPVSKGKAD
AGPSGQGDSVSIGKVVSTPGKTVPVPSGKVDPVSLGKAEAIPEGKVGSLPLEKGSPVTTTKADPRASGKA
QPQSGGKAETKLPGQEGAAAPGEAGAVCLKKETPQASEKVDPGSCRKAEPLASGKGEPVSLGKADSAPSR
KTESPSLGKVVPLSLEKTKPSSSSRQLDRKALGSARSPEGARGSEGRVEPKAEPVSSTEASSLGQKDLEA
AGAERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQDGAGGSAF
SFQAAPRAPSPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAFPEVRVRPGSALAAAVAPPEPAEPV
RDVSWDEKGMTWEVYGAAMEVEVLGMAIQKHLERQIEEHGRQGAPAPPPAARAGPGRSGSVRTAPPDGAA
KRPPGLFRALLQSVRRPRCCSRAGPTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH