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Report for CCDS29320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29320.1 Public Mus musculus 18 Impa2 23 108 98 CCDS HistoryNCBI Gene:114663Re-query CCDS DB by CCDS ID:29320.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025403.7 ENSMUSP00000025403.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025403.7Link to Ensembl Protein Viewer:ENSMUSP00000025403.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025403Re-query CCDS DB by Protein ID:ENSMUSP00000025403
Original member Current member NCBI NM_053261.3 NP_444491.1 Accepted alive Link to Nucleotide Sequence:NM_053261.3Link to Protein Sequence:NP_444491.1Re-query CCDS DB by Nucleotide ID:NM_053261Re-query CCDS DB by Protein ID:NP_444491Link to BLAST:NP_444491.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444491.1 290 Q91UZ5 290 100% 0 0

Chromosomal Locations for CCDS 29320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67289405 67289506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67302176 67302309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67306671 67306775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67309052 67309097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67310647 67310755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67315620 67315728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67316882 67317033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67318395 67318510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAAGCCGAGCAGCGAGGAAGAGGGAGAGTTGGTGCAGGGCGTGGGCCCCTGGGACGAGTGCTTCGAGG
TGGCCGTGCAGTTGGCGCTGCGTGCGGGACAAATCATCAGGAAGGCCCTGACAGAGGAAAAACGCGTCTC
TACAAAAACATCTGCTGCCGATCTTGTGACAGAAACAGATCACCGAGTAGAAGATTTAATTGTTTCTGAG
TTGCGAAAGCGGTTTCCTTCACACAGGTTCATTGCAGAAGAGGCCACAGCCTCCGGGGCCAAGTGTGTGC
TCACCCACAGCCCGACCTGGATCATCGACCCCATCGACGGCACCTGCAACTTTGTGCACAGGTTCCCCAC
TGTGGCAGTTAGCATCGGATTTGCTGTTCACCAGGAGCTGGAATTTGGAGTGATTCACCACTGCACAGAG
GAGCGGCTGTACACCGGCAGGAGGGGCCAAGGCGCCTTTTGCAATGGCCAGCGGCTTCAGGTCTCCAGGG
AGACAGATCTCGCAAAGGCCTTGGTTCTGACAGAAATCGGGCCCAAACGCGACCCCGATACTCTGAAAGT
ATTCCTGAGCAACATGGAGCGGCTGCTGCACGCCAAGGCTCATGGGGTCCGAGTGATTGGCAGCTCCACC
TTGGCCCTCTGTTACCTGGCCTCAGGTGCAGCCGACGCCTATTATCAGTTTGGCCTTCACTGCTGGGACC
TGGCAGCTGCCACAGTCATCATTAGAGAAGCAGGCGGCATTGTGATTGACACCTCAGGTGGACCCCTTGA
CCTCATGTCGTGCAGAGTCGTAGCTGCTGGCACCAGAGAGATGGCAGTGCTCATAGCTCAGGCCCTACAA
ACTATTAACTACGGCCGAGACGATGAGAAGTGA

Translation (290 aa):
MKPSSEEEGELVQGVGPWDECFEVAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHRVEDLIVSE
LRKRFPSHRFIAEEATASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVHQELEFGVIHHCTE
ERLYTGRRGQGAFCNGQRLQVSRETDLAKALVLTEIGPKRDPDTLKVFLSNMERLLHAKAHGVRVIGSST
LALCYLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLDLMSCRVVAAGTREMAVLIAQALQ
TINYGRDDEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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