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Report for CCDS562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
562.1 Public Homo sapiens 1 KTI12 24 110 108 CCDS HistoryNCBI Gene:112970Re-query CCDS DB by CCDS ID:562.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371614.2 ENSP00000360676.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371614.2Link to Ensembl Protein Viewer:ENSP00000360676.1Re-query CCDS DB by Nucleotide ID:ENST00000371614Re-query CCDS DB by Protein ID:ENSP00000360676
Original member Current member NCBI NM_138417.3 NP_612426.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138417.3Link to Protein Sequence:NP_612426.1Re-query CCDS DB by Nucleotide ID:NM_138417Re-query CCDS DB by Protein ID:NP_612426Link to BLAST:NP_612426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612426.1 354 Q96EK9 354 100% 0 0

Chromosomal Locations for CCDS 562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52032697 52033761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGCCGCTCGTGGTGTTTTGCGGGCTGCCGTACAGCGGCAAGAGCCGGCGTGCTGAAGAGTTGCGCGTGG
CGCTGGCTGCCGAGGGCCGCGCGGTGTACGTGGTGGACGACGCAGCTGTCCTGGGCGCAGAGGACCCAGC
GGTGTACGGCGATTCTGCCCGTGAGAAGGCATTGCGTGGAGCTCTGCGAGCCTCCGTGGAACGGCGCCTG
AGTCGCCACGACGTGGTCATCCTGGACTCGCTTAACTACATCAAAGGTTTCCGTTACGAGCTCTACTGCC
TGGCACGGGCGGCGCGCACCCCGCTCTGCCTGGTCTACTGCGTACGGCCCGGCGGCCCGATCGCGGGACC
TCAGGTGGCGGGCGCGAACGAGAACCCTGGCCGGAACGTCAGTGTGAGTTGGCGGCCACGCGCTGAGGAG
GACGGGAGAGCCCAGGCGGCGGGCAGCAGCGTCCTCAGGGAACTGCATACTGCGGACTCTGTAGTAAATG
GAAGTGCCCAGGCCGACGTACCCAAGGAACTGGAGCGAGAAGAATCCGGGGCTGCGGAGTCTCCAGCTCT
TGTGACTCCGGATTCAGAGAAATCTGCAAAGCATGGGTCCGGTGCCTTTTACTCTCCCGAACTCCTGGAG
GCCCTAACGCTGCGCTTTGAGGCTCCCGATTCTCGGAATCGCTGGGACCGGCCTTTATTCACTTTGGTGG
GCCTAGAGGAGCCGTTGCCCCTGGCGGGGATCCGCTCTGCCCTGTTTGAGAACCGGGCCCCACCACCCCA
TCAGTCTACGCAGTCCCAGCCCCTCGCCTCCGGCAGCTTTCTGCACCAGTTGGACCAGGTCACGAGTCAA
GTACTGGCCGGATTGATGGAAGCGCAGAAGAGCGCTGTCCCCGGGGACTTGCTCACGCTTCCTGGTACCA
CAGAGCACTTGCGGTTTACCCGGCCCTTGACCATGGCAGAACTGAGTCGCCTTCGTCGCCAGTTTATTTC
GTACACTAAAATGCATCCCAACAATGAGAACTTGCCGCAACTGGCCAACATGTTTCTTCAGTATTTGAGC
CAGAGCCTGCACTGA

Translation (354 aa):
MPLVVFCGLPYSGKSRRAEELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRGALRASVERRL
SRHDVVILDSLNYIKGFRYELYCLARAARTPLCLVYCVRPGGPIAGPQVAGANENPGRNVSVSWRPRAEE
DGRAQAAGSSVLRELHTADSVVNGSAQADVPKELEREESGAAESPALVTPDSEKSAKHGSGAFYSPELLE
ALTLRFEAPDSRNRWDRPLFTLVGLEEPLPLAGIRSALFENRAPPPHQSTQSQPLASGSFLHQLDQVTSQ
VLAGLMEAQKSAVPGDLLTLPGTTEHLRFTRPLTMAELSRLRRQFISYTKMHPNNENLPQLANMFLQYLS
QSLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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