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Report for CCDS23204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23204.1 Public Mus musculus 9 Etfa 23 108 98 CCDS HistoryNCBI Gene:110842Re-query CCDS DB by CCDS ID:23204.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034866.8 ENSMUSP00000034866.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034866.8Link to Ensembl Protein Viewer:ENSMUSP00000034866.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034866Re-query CCDS DB by Protein ID:ENSMUSP00000034866
Original member Current member NCBI NM_145615.4 NP_663590.3 Accepted alive Link to Nucleotide Sequence:NM_145615.4Link to Protein Sequence:NP_663590.3Re-query CCDS DB by Nucleotide ID:NM_145615Re-query CCDS DB by Protein ID:NP_663590Link to BLAST:NP_663590.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663590.3 333 Q99LC5 333 100% 0 0

Chromosomal Locations for CCDS 23204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 55454724 55454762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55461620 55461700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55464794 55464859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55482273 55482355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55485270 55485338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55486702 55486803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55487400 55487510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55488830 55488929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55495562 55495644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55495742 55495823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55500018 55500164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55512031 55512069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGTTTCGAGCAGCGGCGCCTGGGCAGCTCCGGCGGGCGGCCTCATTGCTCCGTTTTCAGAGTACCTTGG
TAATAGCTGAGCATGCAAATGATTCCCTAGCACCCATTACTCTAAATACTATCACTGCAGCTGGACGTCT
TGGAGGTGAAGTGTCCTGCTTAGTAGCTGGAACCAAGTGTGACAAGGTGGTACAGGATCTATGTAAAGTA
GCTGGCGTAGCAAAGGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTTCTTCCAGAGGAACTCACAC
CATTGATTTTGGAAACTCAGAAGCAGTTCAGTTACACACACATCTGTGCTGGAGCGTCTGCTTTTGGAAA
GAACCTTCTGCCCAGAGTAGCTGCCAAACTTAATGTTGCTCCAGTTTCTGACATCATTGAGATCAAGTCA
CCTGACACATTTGTGAGAACTATCTATGCAGGAAATGCGTTGTGTACAGTAAAGTGTGATGAGAAAGTAA
AGGTGTTTTCTGTTCGAGGAACATCTTTTGAGGCTGCAGCAACAAGTGGAGGTAGTGCTAGTTCAGAAAA
GGCACCAAGTTCTTCATCAGTGGGAATATCAGAGTGGCTTGACCAGAAATTGACAAAAAGTGACCGACCA
GAACTAACTGGTGCCAAAGTGGTGGTATCTGGTGGTCGGGGTTTGAAGAGTGGAGAGAACTTTAAACTGC
TGTATGACCTGGCAGATCAACTACATGCTGCAGTTGGTGCTTCCCGAGCTGCTGTTGATGCTGGCTTTGT
TCCCAATGACATGCAAGTTGGTCAGACAGGAAAAATAGTAGCTCCAGAACTTTATATTGCTGTAGGAATA
TCTGGAGCCATTCAACATTTAGCTGGGATGAAGGACAGCAAGACAATCGTGGCTATTAACAAAGATCCAG
AAGCTCCAATTTTCCAGGTGGCAGATTATGGAATAGTTGCAGATTTATTTAAGGTGGTTCCTGAAATGAC
AGAAATACTGAAGAAAAAATAA

Translation (333 aa):
MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAAGRLGGEVSCLVAGTKCDKVVQDLCKV
AGVAKVLVAQHDAYKGLLPEELTPLILETQKQFSYTHICAGASAFGKNLLPRVAAKLNVAPVSDIIEIKS
PDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSGGSASSEKAPSSSSVGISEWLDQKLTKSDRP
ELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGI
SGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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