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Report for CCDS25998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25998.1 Public Mus musculus 12 Fntb 23 108 98 CCDS HistoryNCBI Gene:110606Re-query CCDS DB by CCDS ID:25998.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041008.9 ENSMUSP00000035498.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041008.9Link to Ensembl Protein Viewer:ENSMUSP00000035498.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000041008Re-query CCDS DB by Protein ID:ENSMUSP00000035498
Original member NCBI NM_145927.2 NP_666039.1 Updated not alive Link to Nucleotide Sequence:NM_145927.2Link to Protein Sequence:NP_666039.1Re-query CCDS DB by Nucleotide ID:NM_145927Re-query CCDS DB by Protein ID:NP_666039
Current member NCBI NM_145927.3 NP_666039.1 Accepted alive Link to Nucleotide Sequence:NM_145927.3Link to Protein Sequence:NP_666039.1Re-query CCDS DB by Nucleotide ID:NM_145927Re-query CCDS DB by Protein ID:NP_666039Link to BLAST:NP_666039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666039.1 437 Q8K2I1 437 100% 0 0

Chromosomal Locations for CCDS 25998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76837508 76837651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76862486 76862550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76873376 76873448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76875032 76875123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76887732 76887878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76887972 76888055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76897327 76897413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76906945 76907074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76910211 76910343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76914620 76914731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76916414 76916528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76920076 76920207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGCTTCTTCGAGTTCCTTCACCTATTATTGTCCTCCATCTTCCTCCCCTGTTTGGTCAGAACCGCTGT
ATAGTCTGAGACCTGAGCACGTGCGGGAGCGGTTGCAAGACGACTCAGTGGAAACAGTCACATCCATAGA
ACAGGCCAAAGTAGAAGAGAAGATCCAGGAGGTCTTCAGTTCTTACAAGTTTAACCACCTTGTACCAAGG
CTCATTTTGCAGAGGGAGAAGCACTTCCATTATCTGAAAAGAGGCCTTCGACAACTGACAGATGCCTATG
AGTGTCTGGATGCCAGCCGCCCCTGGCTCTGCTACTGGATCCTGCACAGCCTGGAGCTCCTTGACGAACC
CATCCCCCAGATAGTGGCCACAGACGTGTGTCAGTTCCTGGAGCTGTGTCAGAGTCCAGACGGTGGCTTT
GGAGGGGGCCCCGGTCAGTACCCACACCTCGCACCCACTTATGCAGCCGTCAATGCGCTGTGCATCATCG
GCACAGAGGAAGCCTACAACGTCATTAACAGGGAGAAACTCCTTCAGTATTTGTACTCCCTAAAGCAACC
CGACGGCTCTTTTCTCATGCACGTCGGAGGTGAGGTGGACGTAAGGAGTGCATACTGTGCTGCCTCGGTA
GCCTCTCTCACCAACATCATCACTCCAGACCTCTTTGAAGGCACGGCCGAATGGATAGCCAGGTGCCAGA
ACTGGGAAGGCGGCATTGGTGGGGTGCCAGGGATGGAAGCCCACGGTGGCTACACCTTCTGTGGCTTGGC
TGCGCTGGTTATCCTCAAGAAGGAACGTTCTTTGAACCTGAAGAGCTTGCTACAATGGGTGACAAGCCGG
CAGATGCGGTTTGAAGGAGGCTTTCAGGGCCGCTGCAACAAGCTGGTGGACGGCTGCTACTCCTTCTGGC
AGGCAGGGCTCCTGCCCCTGCTGCACCGAGCCCTCCACGCTCAAGGTGACCCTGCCCTCAGCATGAGCCA
TTGGATGTTCCATCAGCAGGCGCTGCAGGAGTACATCCTGATGTGCTGCCAGTGTCCAGCCGGGGGGCTT
CTGGACAAGCCTGGCAAGTCACGTGACTTCTATCATACTTGCTACTGCCTGAGCGGCCTCTCCATTGCCC
AGCATTTCGGAAGCGGAGCCATGTTGCACGATATGGTCATGGGTGTGCCCGAAAACGTTCTGCAGCCCAC
ACACCCTGTGTACAACATTGGACCTGAGAAGGTGATCCAGGCCACCACACACTTTCTGCAGAAGCCAGTC
CCAGGCTTTGAGGAATGTGAAGATGAGGTGACCTCAGATCCTGCCACCGACTAG

Translation (437 aa):
MASSSSFTYYCPPSSSPVWSEPLYSLRPEHVRERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPR
LILQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGF
GGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASV
ASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSR
QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGL
LDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDMVMGVPENVLQPTHPVYNIGPEKVIQATTHFLQKPV
PGFEECEDEVTSDPATD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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