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Report for CCDS13504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13504.1 Public Homo sapiens 20 OGFR 24 110 108 CCDS HistoryNCBI Gene:11054Re-query CCDS DB by CCDS ID:13504.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290291.10 ENSP00000290291.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290291.10Link to Ensembl Protein Viewer:ENSP00000290291.6Re-query CCDS DB by Nucleotide ID:ENST00000290291Re-query CCDS DB by Protein ID:ENSP00000290291
Original member Current member NCBI NM_007346.4 NP_031372.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007346.4Link to Protein Sequence:NP_031372.2Re-query CCDS DB by Nucleotide ID:NM_007346Re-query CCDS DB by Protein ID:NP_031372Link to BLAST:NP_031372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031372.2 677 Q9NZT2-1 677 100% 0 0

Chromosomal Locations for CCDS 13504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62804860 62805030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62807537 62807605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62808247 62808325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62809585 62809663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62810499 62810565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62811462 62811610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62812230 62813649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGACGACCCCGACTGCGACTCCACCTGGGAGGAGGACGAGGAGGATGCGGAGGACGCGGAGGACGAGG
AC
TGCGAGGACGGCGAGGCCGCCGGCGCGAGGGACGCGGACGCAGGGGACGAGGACGAGGAGTCGGAGGA
G
CCGCGGGCGGCGCGGCCCAGCTCGTTCCAGTCCAGAATGACAGGGTCCAGAAACTGGCGAGCCACGAGG
GAC
ATGTGTAGGTATCGGCACAACTATCCGGATCTGGTGGAACGAGACTGCAATGGGGACACGCCAAACC
TG
AGTTTCTACAGAAATGAGATCCGCTTCCTGCCCAACGGCTGTTTCATTGAGGACATTCTTCAGAACTG
G
ACGGACAACTATGACCTCCTTGAGGACAATCACTCCTACATCCAGTGGCTGTTTCCTCTGCGAGAACCA
GGA
GTGAACTGGCATGCCAAGCCCCTCACGCTCAGGGAGGTCGAGGTGTTTAAAAGCTCCCAGGAGATCC
AG
GAGCGGCTTGTCCGGGCCTACGAGCTCATGCTGGGCTTCTACGGGATCCGGCTGGAGGACCGAGGCAC
G
GGCACGGTGGGCCGAGCACAGAACTACCAGAAGCGCTTCCAGAACCTGAACTGGCGCAGCCACAACAAC
CTC
CGCATCACACGCATCCTCAAGTCGCTGGGTGAGCTGGGCCTCGAGCACTTCCAGGCGCCGCTGGTCC
GC
TTCTTCCTGGAGGAGACGCTGGTGCGGCGGGAGCTGCCGGGGGTGCGGCAGAGTGCCCTGGACTACTT
C
ATGTTCGCCGTGCGCTGCCGACACCAGCGCCGCCAGCTGGTGCACTTCGCCTGGGAGCACTTCCGGCCC
CGC
TGCAAGTTCGTCTGGGGGCCCCAAGACAAGCTGCGGAGGTTCAAGCCCAGCTCTCTGCCCCATCCGC
TC
GAGGGCTCCAGGAAGGTGGAGGAGGAAGGAAGCCCCGGGGACCCCGACCACGAGGCCAGCACCCAGGG
T
CGGACCTGTGGGCCAGAGCATAGCAAGGGTGGGGGCAGGGTGGACGAGGGGCCCCAGCCACGGAGCGTG
GAG
CCCCAGGATGCGGGACCCCTGGAGAGGAGCCAGGGGGATGAGGCAGGGGGCCACGGGGAAGATAGGC
CG
GAGCCCTTAAGCCCCAAAGAGAGCAAGAAGAGGAAGCTGGAGCTGAGCCGGCGGGAGCAGCCGCCCAC
A
GAGCCAGGCCCTCAGAGTGCCTCAGAGGTGGAGAAGATCGCTCTGAATTTGGAGGGGTGTGCCCTCAGC
CAG
GGCAGCCTCAGGACGGGGACCCAGGAAGTGGGCGGTCAGGACCCTGGGGAGGCAGTGCAGCCCTGCC
GC
CAACCCCTGGGAGCCAGGGTGGCCGACAAGGTGAGGAAGCGGAGGAAGGTGGATGAGGGTGCTGGGGA
C
AGTGCTGCGGTGGCCAGTGGTGGTGCCCAGACCTTGGCCCTTGCCGGGTCCCCTGCCCCATCGGGGCAC
CCC
AAGGCTGGACACAGTGAGAACGGGGTTGAGGAGGACACAGAAGGTCGAACGGGGCCCAAAGAAGGTA
CC
CCTGGGAGCCCATCGGAGACCCCAGGCCCCAGCCCAGCAGGACCTGCAGGGGACGAGCCAGCCGAGAG
C
CCATCGGAGACCCCAGGCCCCCGCCCAGCAGGACCTGCAGGGGACGAGCCAGCCGAGAGCCCATCGGAG
ACC
CCAGGCCCCCGCCCGGCAGGACCTGCAGGGGACGAGCCAGCCGAGAGCCCATCGGAGACCCCAGGCC
CC
AGCCCGGCAGGACCTACAAGGGATGAGCCAGCCGAGAGCCCATCGGAGACCCCAGGCCCCCGCCCGGC
A
GGACCTGCAGGGGACGAGCCAGCCGAGAGCCCATCGGAGACCCCAGGCCCCCGCCCGGCAGGACCTGCA
GGG
GACGAGCCAGCCGAGAGCCCATCGGAGACCCCAGGCCCCAGCCCGGCAGGACCTACAAGGGATGAGC
CA
GCCAAGGCGGGGGAGGCAGCAGAGTTGCAGGACGCAGAGGTGGAGTCTTCTGCCAAGTCTGGGAAGCC
T
TAA


Translation (677 aa):
MDDPDCDSTWEEDEEDAEDAEDEDCEDGEAAGARDADAGDEDEESEEPRAARPSSFQSRMTGSRNWRATR
D
MCRYRHNYP
DLVERDCNGDTPNLSFYRNEIRFLPNGCFIEDILQNWTDNYDLLEDNHSYIQWLFPLREP
G
VNWHAKPLTLREVE
VFKSSQEIQERLVRAYELMLGFYGIRLEDRGTGTVGRAQNYQKRFQNLNWRSHNN
L
RITRILKSLGELGLEHFQAPLVRFFLEETLVRRELPGVRQSALDYFMFAVRCRHQRRQLVHFAWEHFRP
R
CKFVWGPQDKLRRFKPSSLPHPLEGSRKVEEEGSPGDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSV
E
PQDAGPLERSQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALS
Q
GSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGH
P
KAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSE
T
PGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPA
G
DEPAESPSETPGPSPAGPTRDEPAKAGEAAELQDAEVESSAKSGKP




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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