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Report for CCDS27242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27242.1 Public Mus musculus 14 Chmp7 23 108 98 CCDS HistoryNCBI Gene:105513Re-query CCDS DB by CCDS ID:27242.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036381.9 ENSMUSP00000047700.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036381.9Link to Ensembl Protein Viewer:ENSMUSP00000047700.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036381Re-query CCDS DB by Protein ID:ENSMUSP00000047700
Original member Current member NCBI NM_134078.4 NP_598839.2 Accepted alive Link to Nucleotide Sequence:NM_134078.4Link to Protein Sequence:NP_598839.2Re-query CCDS DB by Nucleotide ID:NM_134078Re-query CCDS DB by Protein ID:NP_598839Link to BLAST:NP_598839.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598839.2 451 Q8R1T1-1 451 100% 0 0

Chromosomal Locations for CCDS 27242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69718248 69718300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69718515 69718697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69719129 69719189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69719399 69719497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69719748 69719867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69720112 69720160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69720928 69721061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69721207 69721392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69730123 69730294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69732191 69732489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGTGGTCCCCGGAGCGGGAGGCCCAGGCCCCGACCGGGGGAGACCCGGCGGGCCTCCTGCCGCCCGAGT
GGGAGGAGGATGAGGAGCGCATGTCTTTTCTGTTCTCCGCCTTTAAGAGGAGTCGCGAGGTGAACAGCAC
CGACTGGGACAGCAAGATGGGCTTCTGGGCTCCGTTGGTGCTGAGCCACAGCCGCCGCCAAGGGGTGGTG
CGCCTGCGACTGCGGGACTTGCAGGAGGCCTTCCAGCGCAAGGGCAGTGTCCCGCTGGGGCTGGCTACGG
TGCTGCAGGACCTGCTGCGTCGAGGCGAGCTGCAGCGAGAGTCAGACTTCATGGCCAGTGTGGACAGCAG
CTGGATCTCCTGGGGGGTCGGCGTCTTCCTGCTGAAGCCCCTCAAGTGGACTCTTTCTAACATGCTGGGG
GATCACAAAGTTCCAGCGGAGGAGGTGCTGGTGGCTGTGGAGCTGCTGAAGGAAAAGGCCGAGGAGGTGT
ATCGCCTATACCAGAACTCGCCCCTCTCCTCCCACCCTGTGGTGGCCCTGTCAGAGCTGAGTGCTCTGTG
CGCCAACTCCTGCCCGGATGAGAGGACCTTCTACCTCGTGCTGCTGCAGCTGCAGAAGGAGAAGAGAGTC
ACTGTCTTGGAGCAGAATGGAGAGAAGATTGTGAAGTTTGCCAGGGGACCACATGCCAAGGTATCTCCTG
TGAACGACGTGGATGTTGGGGTCTACCAGCTGATGCAGAGTGAGCAGCTCCTCTCTCGGAAGGTCGAGTC
TTTATCCCAAGAGTCTGAGAGGTGCAAAGAGGAAGCCCGCCGGGCATGCCGAGCAGGAAAGAAGCAGCTG
GCACTGAGGTCTCTCAAGGCCAAGCAGAGGACAGAGAAACGCATTGAGGCCCTGCATGCCAAGCTGGACA
CTGTTCAAGGCATCCTGGATCGCATCTATGCCTCCCAGACTGATCAGATGGTTTTTAATGCCTACCAAGC
TGGTGTGGGAGCCTTGAAACTCTCCATGAAGGATGTCACAGTGGAGAAAGCAGAGAGCCTTGTGGATCAG
ATCCAGGAGCTTTGTGACACGCAAGATGAAGTTTCTCAGACTCTGGCTGGTGGAGTAACCAATGGTTTAG
ATTTTGACAGTGAGGAACTGGAGAAGGAGTTGGACATCCTCCTTCAGGACACCACCACAGAACCTTTGAG
CCTGCTCGAAACCCCCCAGGAGACAACGCTTTATACCAACAGTGTGCCTAAGCCTAGGATCTTGGATGCT
GAACTTGAAGCTGAACTTGAGAAATTGTCATTATCAGAAGGAGGTTTGATCCCAAGCAGTAAATCTCCAA
AAAGGCAATTGGAGCCAACTCTCTAA

Translation (451 aa):
MWSPEREAQAPTGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLVLSHSRRQGVV
RLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
DHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTFYLVLLQLQKEKRV
TVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQESERCKEEARRACRAGKKQL
ALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQ
IQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQDTTTEPLSLLETPQETTLYTNSVPKPRILDA
ELEAELEKLSLSEGGLIPSSKSPKRQLEPTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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