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Report for CCDS87333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87333.1 Public Homo sapiens 5 MARCOL 24 110 108 CCDS HistoryNCBI Gene:105378220Re-query CCDS DB by CCDS ID:87333.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000638089.2 ENSP00000490292.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000638089.2Link to Ensembl Protein Viewer:ENSP00000490292.1Re-query CCDS DB by Nucleotide ID:ENST00000638089Re-query CCDS DB by Protein ID:ENSP00000490292
Original member Current member NCBI NM_001363511.2 NP_001350440.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363511.2Link to Protein Sequence:NP_001350440.1Re-query CCDS DB by Nucleotide ID:NM_001363511Re-query CCDS DB by Protein ID:NP_001350440Link to BLAST:NP_001350440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350440.1 285 A0A1B0GUY1 285 100% 0 0

Chromosomal Locations for CCDS 87333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 148238598 148238646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 148242446 148243254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGAGGGCTTTCATTTTCTTTCTCTTCATGCTCCTGGCCATGTTCTCAGCATCTTCAACCCAGATTTCAA
ATACCAGTGTTTTCAAACTAGAAGAGAATCCAAAACCTGCACTTATTCTGGAGGAAAAAAATGAAGCTAA
CCATCTAGGAGGACAAAGAGATTCTAATAAGCAAGGAGGTAGTTATACACAAGGAAATCCAGGAACGTTT
AGGCTTCAAGGACAACCAGGCTATTTTAACAAGCTAGAGAAACCAAGACATTTTAAGCAAGGGAGAGCAG
GAGTTTTAAACCAGCCTGGGATTTTAAAGAATTCAGGAAAATCTAACCAAAAAGGGAATCCAGAATCTTC
TAATAAGCAGGAAAACTCAGGATCTTCTAGCCAACTAGGGAGACCAGGGATTTCTACCCAACAGGGAAAT
CCAGGGTCATCTGACCAACAAGAGAAACCAGGGTCATTTAGCCAGAAAGTGATGGTGGGGTCATCTAGCC
AACAGGGGAAGCCAGGATCATCTAGCCAACACGGGAATCTAGGGTCATCAACCCAGAAAGGGAATTTAGG
ATCTTCTAGCCTACAAGGGCATCTGGGTTTATCTAGCCATCAAGGGAAGCCAGAGTCATCTGGCCAACAG
GGGAAGCCAGGGTCATCTAGCCAACAAGGAAATCTAGGAACTTCTGGCCAACAGGAGAAGCCAGGATCTT
CTAGCCAACAGGGGAAGCCAGGGTTGTCTAGCCATCAAGGGAAGCCAGGGTCATCTAGCCAACAAGGAAA
TCTACATTTATCTAGCCAGCAAGGGAATCAAGGACCTTCTAGCAAACAGAGGAAGCCAGGTTCATCCAGC
CGTCAAGGAAATCTATGA

Translation (285 aa):
MRAFIFFLFMLLAMFSASSTQISNTSVFKLEENPKPALILEEKNEANHLGGQRDSNKQGGSYTQGNPGTF
RLQGQPGYFNKLEKPRHFKQGRAGVLNQPGILKNSGKSNQKGNPESSNKQENSGSSSQLGRPGISTQQGN
PGSSDQQEKPGSFSQKVMVGSSSQQGKPGSSSQHGNLGSSTQKGNLGSSSLQGHLGLSSHQGKPESSGQQ
GKPGSSSQQGNLGTSGQQEKPGSSSQQGKPGLSSHQGKPGSSSQQGNLHLSSQQGNQGPSSKQRKPGSSS
RQGNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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