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Report for CCDS36225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36225.1 Public Mus musculus 11 Tsr1 23 108 98 CCDS HistoryNCBI Gene:104662Re-query CCDS DB by CCDS ID:36225.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045807.13 ENSMUSP00000039027.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045807.13Link to Ensembl Protein Viewer:ENSMUSP00000039027.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045807Re-query CCDS DB by Protein ID:ENSMUSP00000039027
Original member Current member NCBI NM_177325.3 NP_796299.2 Accepted alive Link to Nucleotide Sequence:NM_177325.3Link to Protein Sequence:NP_796299.2Re-query CCDS DB by Nucleotide ID:NM_177325Re-query CCDS DB by Protein ID:NP_796299Link to BLAST:NP_796299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796299.2 803 Q5SWD9-1 803 100% 0 0

Chromosomal Locations for CCDS 36225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74898119 74898215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74898377 74898480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74899182 74899401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74899509 74899643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74900153 74900577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74901489 74901648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74902009 74902166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74903820 74904013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74904829 74904991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74905206 74905316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74905891 74906023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74907335 74907451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74907824 74907964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74908046 74908120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74908228 74908406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGCGGCTCACCGCTCCGGGCCGCTGAAGCAGCAGAATAAAGCTCATAAAGGCGGGCGGCATCACGGCG
GTGGGTCCGCACAACGGGACAGCAAAGGCCGGGTAGGACCGAAAATCCTCTGCAAGAAGCTGAAGAGGCA
GCTCAGCCGAATAGACCAGAGGCATCGCGCCAGCCAGCTCCGAAAGCAAAAGAGGGAGTCGGTTCTGGCC
GAGAAGAGGCAGCTGGGCAGCAAGGATGGTCCTCCACATCAGGTGCTGGTGGTGCCTCTGCACAGCAGGA
TTTCCCTTCCAGAGGCATTTAAACTGCTTCAGAATGAAGACTTGGGAACGGTGTATTTGAGTGAACGGGG
AAGCACCCAGAGTTTTATGCTTCTGTGCCCTAGCTTGAAACATCGATGGTTTTTCACATATGCAAGACCA
GGGGATCTGCATACTCTGTTAGACATGGCTAAAGTCGCTGATACCATTCTGTTCCTCCTGGACCCACTAG
AAGGCTGGGACAGTACGGGGGATTATTGCCTGTCTTGCCTTTTTGCTCAGGGCCTTCCCACCTATACACT
AGCTGTCCAGGGCCTTTCTGGCTTCCCACCAAAGAAACAAATAGATGCCCGAAAGAAGCTAAGTAAAATG
GTGGAGAAACGCTTCCCTGAAGACAAACTTCTGCTCCTAGACACGCAGCAGGAATCAGGAATGCTACTTA
GACAGTTGGCTAACCAGAAGCAACGGCATCTTGCTTTTCGGGATCGGCGAGCTTACTTGTTTGCCCATGT
TGCTGACTTCGTGCCTAGTGAGGAGAGTGACTTAGTGGGCACCTTGAAAATCTCAGGCTATGTTCGTGGG
AGGACTCTGAATGTAAATAGCTTGCTGCATATCGTTGGACACGGTGATTTCCAAATGAATCAAATAGATG
CTCCTGTGGATCCGTTCCCTTTAAATCCTAGAGTGATTAAATCCCAGAAGAAACCAAACATGGCAATGGA
GGTTTGTGTTACAGATGCTGCTCCTGACATGGAAGAAGACCTTAAGGTTCTGATGAAGGCAGACCCTGAT
CACCAGGAGTCTTTACAAACAGAGGCTATTCCAGATCCTATGGAAGGAGAGCAGACCTGGCCCACTGAGG
AAGAGCTGGATGAGGCAGATGACTTACTGAAGCAACGGTCCAGAGTGGTAAAGAAGGTCCCTAAAGGAAC
ATCCAGTTACCAGGCTGAGTGGATTCTGGATGAAGGTGATGAAAGTGATGGGGAAGGTGGTGAATATGAT
GATATACAACACGAAGGTTTCATGGAAGAGGAGTCTCAGGATGGGAGTGGTGAGGAAGAGGAGGAAGAAT
GTGAAACTATGACTCTCGGGGAGTCTGTGCGTGACGATCTATACGATGAGAAAGTAGATGCAGAGGACGA
GGAGAGAATGTTGGAGAAATATAAACAAGAAAGACTGGAAGAAATGTTTCCAGATGAAATGGATACCCCC
CGTGATGTAGCTGCTAGAATTCGATTTCAGAAATATAGAGGCCTCAAGAGTTTCCGGACATCTCCTTGGG
ATCCTAAAGAAAACCTTCCTAGAGATTATGCTCGGATATTTCAGTTTCAGAATTTTGTTAATACTAGAAA
AAGAATTTTTAAAGAGATTGAGGAAAAAGAAGCTGAAGGAGCTGAGGTGGGCTGGTATGTCACACTCCAT
GTTTCTGATGTCCCTGTCTCAGTGGTTGAGTATTTCAGGCAAGGAGCGCCCTTGATTGCATTTTCTTTGC
TACCTTATGAACAGAAGATGTCTGTATTGAACATGGTGGTGAGCCGGAACCCTGGCAACACGGAACCTGT
GAAGGCGAAAGAAGAATTGATCTTCCACTGTGGGTTCAGGCGCTTCCGAGCTTCGCCTTTGTTCTCTCAG
CACACAGCAGCTGATAAACATAAATTTCAAAGATTCCTGACTGCTGATGCTGCCTTCGTGGTGACAGTGT
TTGCGCCAATCACGTTCCCTCCTGCATCTGTGCTGCTTTTCAAGCAGAGAAGAAATGGAATGCACAGCCT
CATCGCTACAGGCCATCTGTTTTCAGTGGACCCAGACAGGATGGTCATAAAGAGAGTGGTTCTAAGTGGT
CATCCTTTTAAAATATTTACCAAGATGGCAGTAGTGCGGTACATGTTCTTCAACAGAGAGGATGTGATGT
GGTTTAAGCCTGTGGAACTGAGAACCAAGTGGGGCCGCCGGGGACATATCAAAGAGCCTCTAGGTACCCA
TGGCCATATGAAGTGCAGTTTTGATGGGAAGCTGAAATCTCAGGACACAGTATTAATGAATCTCTATAAG
CGAGTATTTCCCAAGTGGACTTATGACCCATATGTACCAGAGCCAGTACCTTGGGTTAAAAGTGACATCT
CTTCAACAGTGTCTGAAGTAGACATGGAGTAA

Translation (803 aa):
MAAHRSGPLKQQNKAHKGGRHHGGGSAQRDSKGRVGPKILCKKLKRQLSRIDQRHRASQLRKQKRESVLA
EKRQLGSKDGPPHQVLVVPLHSRISLPEAFKLLQNEDLGTVYLSERGSTQSFMLLCPSLKHRWFFTYARP
GDLHTLLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGLSGFPPKKQIDARKKLSKM
VEKRFPEDKLLLLDTQQESGMLLRQLANQKQRHLAFRDRRAYLFAHVADFVPSEESDLVGTLKISGYVRG
RTLNVNSLLHIVGHGDFQMNQIDAPVDPFPLNPRVIKSQKKPNMAMEVCVTDAAPDMEEDLKVLMKADPD
HQESLQTEAIPDPMEGEQTWPTEEELDEADDLLKQRSRVVKKVPKGTSSYQAEWILDEGDESDGEGGEYD
DIQHEGFMEEESQDGSGEEEEEECETMTLGESVRDDLYDEKVDAEDEERMLEKYKQERLEEMFPDEMDTP
RDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFVNTRKRIFKEIEEKEAEGAEVGWYVTLH
VSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQ
HTAADKHKFQRFLTADAAFVVTVFAPITFPPASVLLFKQRRNGMHSLIATGHLFSVDPDRMVIKRVVLSG
HPFKIFTKMAVVRYMFFNREDVMWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYK
RVFPKWTYDPYVPEPVPWVKSDISSTVSEVDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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