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Report for CCDS39109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39109.1 Public Mus musculus 5 Nfxl1 23 108 98 CCDS HistoryNCBI Gene:100978Re-query CCDS DB by CCDS ID:39109.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087216.11 ENSMUSP00000084467.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087216.11Link to Ensembl Protein Viewer:ENSMUSP00000084467.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087216Re-query CCDS DB by Protein ID:ENSMUSP00000084467
Original member Current member NCBI NM_133921.3 NP_598682.2 Accepted alive Link to Nucleotide Sequence:NM_133921.3Link to Protein Sequence:NP_598682.2Re-query CCDS DB by Nucleotide ID:NM_133921Re-query CCDS DB by Protein ID:NP_598682Link to BLAST:NP_598682.2

Chromosomal Locations for CCDS 39109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72514158 72514331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72516212 72516265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72517026 72517112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72518195 72518299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72522148 72522217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72523509 72523675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72524087 72524227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72524647 72524668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72528159 72528250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72529012 72529171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72529384 72529504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72533045 72533135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72537366 72537488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72538150 72538274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72539606 72539720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72540294 72540394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72540492 72540653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72540854 72541032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72550292 72550422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72552643 72552752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72556172 72556345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72559014 72559266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGGACGCTCCCTGGCGCCAGGTGGCCGCTGGCCGAGGCCGAGCCCGAGGACGGGCCACCGCAGTGCCCC
TCTCAGGAAATGGAGTCCCTTTTGGTGGCGCTGGAGGAGGGCGAGCCAAAGGGTCTGGGGGCGCGGTGTC
TTCGGGCCCCGGCCCCGGGGGAGCAGCAGCTCTGGCCCCTGCGGGTCGCGGGCAGCGCTCAGCTGGAGGC
GAAGCCCCGCAGCCCCCGGGGGCCCGGGGTGAGGATGGCTCAGAACTAATGTCTCAGAAGAAATTTGAGG
AGATCAAGAAGTCCAATCAAGCTGCAGCCAGAAAGCTGTTGGAGGAGCACTGCAGCTCTTCCTCTGAAGA
AGAAGGGGATGAAGACTTGGAAGGAAAACAGGGGAAAATTGTTGCTAATACATTCACAACATACACTACT
CACACAGATGGAGATATACATGAATTAGAGCGAACAAAACAGTATCTGAATGAGGCTTTCCAAGCAGGGG
CTATGACGTGCCTAATTTGTATTGCTTCAGTGAAGAGAAACCAGGCAGTTTGGAGCTGTTCAGGATGTTT
CTGTATATTCCATATGCCCTGTATTCAGAAGTGGGCTAAAGACAGCCAGTTTCTTGTGTCTTCTGTGACA
GACGATGATTTTGGAAAGAAAGATTATCCCTGGCCATGTCCAAAATGTAGATTTGAATACAAAAGATCAG
AAACACCTAGTAGATATTATTGCTACTGTGGAAAAGTAGAAGATCCACCTTTAGATCCGTGGCTTGTACC
TCATTCGTGTGGCCAAGTATGTGAGAGAGAATTTAAACCTTCTTGTGGTCATAAATGCTTGCTGCTCTGC
CATCCAGGTCCCTGCCCTCCTTGTCCAAAGATGGTCACAACCACTTGTTACTGTAAGAAAGCCAAGCCTA
TCCCTCGCAGGTGCAGTGCCAAGCAGTGGTCCTGTCAGCTGCCATGTGGGCGAAAGCTGCTTTGTGGACA
TCATAAGTGTGAAAATCCTTGCCATGCAGGAAACTGTCAGCCTTGTCCAAGAGTTAGTAGACAAAAATGT
GTATGTGGCAAAAAAGTAGCAGAAAGAAGTTGTGCAAGCCCAGTGTGGCATTGTGATCAAGTATGTGGAA
AGACACTGCCATGTGGTAATCATACATGTGAGCAAGTTTGTCATGTTGGTGCTTGTGGAGAGTGTCCTCG
ATCTGGGAAGAGGTCCTGTCCATGTCAGAAATCAAAGTTTTCTTTGCCTTGTACAGAAGATGTACCAACT
TGTGGAGACAGCTGTGACAAAATACTTGAATGTGGAATCCATAGGTGTTCACAGCGTTGCCACCGAGGTC
CTTGTGAAACATGCAGACAAGAAGTGGAAAAACAGTGTCGTTGTGGAAAGCACACAAAGCGAATGCCTTG
TCACAAGCCTTACCTTTGTGAAACAAAGTGTGTTAAAATGCGGGACTGTCAAAAGCATCAGTGTAGGAGA
AAGTGTTGCCCTGGAAACTGTCCACCTTGTGATCAAAATTGTGGACGGACTTTAGGATGTAGAAACCATA
AGTGTCCGTCTGTCTGCCATAGAGGCAGTTGCTATCCATGTCCAGAAACGGTAGATGTGAAGTGCAATTG
TGGTAATGCAAAGGTGACAGTACCCTGTGGCCGAGAGCGGACCACAAGGCCACCTAAGTGCAAAGAGCTG
TGCAGTCGACCACCAACATGTCATCATGCAAGTCAAGAAAAACACCGCTGTCACTTTGGCCCATGTCCAC
CGTGCCATCAGCCTTGCCAAAAAGTTCTGGAGAAGTGTGGGCACTTGTGTCCTGAGTCATGCCATGATCA
AGCATTAGTAAAGCAGACTGGCAGGCATCAGCCATCAGGCCCTTGGGAGCAGCCAGCTGAGCCTGCATTC
ATCCAGACGGCCCTGCCTTGCCCTCCGTGTCAAGTTCCCATCCCTGTGGAATGTCTGGGGAAGCATGAGG
TGAGCCCACTACCATGCCATGCTGTAGGACCCTATTCTTGCAAGAGACTTTGTGGAAGAATGTTGCGCTG
TCAGAATCATACATGTATGAAAGAGTGCCACAAAGTTACTGAAGTTGATAGCTCTACTGGCAAAAATAAG
GCTGGCCCAGAATGCTTTCACTGTGAAGAAGGGTGCTCTAAGTCACGGCCTGCGGGTTGTCCTCACCCTT
GTGTTTTGCCATGTCACCCTGGAAAATGCCCTCCTTGTGTCCAGATGCTTAGAATAAAATGTCACTGCAA
GATCACAAGCCTGTATGTGGAATGTAGAAAAATAACCACAGCTGATGTAAGCGAAAAGAACCTCCTCAGT
TGCTGCAAAAACCAGTGCCCCAAAGAGCTTCCTTGTGGCCACAGATGCAAAGAGATGTGCCATCCTGGTG
AATGCCCCTTTAATTGCAACCAGAAGGTAAAACTTAGATGCCCTTGTAAAAGAATAAAACGGGAGTTGCC
TTGCAATAAAGTACGTGAAAATCAGGTTTCAGTTGAATGTGATGCAACGTGCAAGGAGATGAAGCGGAAA
GCGTCTGAGGTTAAAGAAGCAGAAGCCAACGCTGCCCTGGAAGAAGAAAAGCGAAGGCAGCAGGCTGAAC
TGGAGGCTTTTGAAAACAGACTGAAGGGCCGTCGGAAGAAGAGCAGGAAACGCGATGAAGTGGCCGTGGA
GCTCTCGCCTTGGCAGAAGTATAAGTCCTACCTCCTTCCCGTGTGTGCAGTTGTGGTGGCAGTGCTTATG
TGGTACATCTTCCATGGTGTGGATTAA

Translation (918 aa):
MDAPWRQVAAGRGRARGRATAVPLSGNGVPFGGAGGGRAKGSGGAVSSGPGPGGAAALAPAGRGQRSAGG
EAPQPPGARGEDGSELMSQKKFEEIKKSNQAAARKLLEEHCSSSSEEEGDEDLEGKQGKIVANTFTTYTT
HTDGDIHELERTKQYLNEAFQAGAMTCLICIASVKRNQAVWSCSGCFCIFHMPCIQKWAKDSQFLVSSVT
DDDFGKKDYPWPCPKCRFEYKRSETPSRYYCYCGKVEDPPLDPWLVPHSCGQVCEREFKPSCGHKCLLLC
HPGPCPPCPKMVTTTCYCKKAKPIPRRCSAKQWSCQLPCGRKLLCGHHKCENPCHAGNCQPCPRVSRQKC
VCGKKVAERSCASPVWHCDQVCGKTLPCGNHTCEQVCHVGACGECPRSGKRSCPCQKSKFSLPCTEDVPT
CGDSCDKILECGIHRCSQRCHRGPCETCRQEVEKQCRCGKHTKRMPCHKPYLCETKCVKMRDCQKHQCRR
KCCPGNCPPCDQNCGRTLGCRNHKCPSVCHRGSCYPCPETVDVKCNCGNAKVTVPCGRERTTRPPKCKEL
CSRPPTCHHASQEKHRCHFGPCPPCHQPCQKVLEKCGHLCPESCHDQALVKQTGRHQPSGPWEQPAEPAF
IQTALPCPPCQVPIPVECLGKHEVSPLPCHAVGPYSCKRLCGRMLRCQNHTCMKECHKVTEVDSSTGKNK
AGPECFHCEEGCSKSRPAGCPHPCVLPCHPGKCPPCVQMLRIKCHCKITSLYVECRKITTADVSEKNLLS
CCKNQCPKELPCGHRCKEMCHPGECPFNCNQKVKLRCPCKRIKRELPCNKVRENQVSVECDATCKEMKRK
ASEVKEAEANAALEEEKRRQQAELEAFENRLKGRRKKSRKRDEVAVELSPWQKYKSYLLPVCAVVVAVLM
WYIFHGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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