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Report for CCDS57083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57083.1 Public Mus musculus 17 Esp36 23 108 98 CCDS HistoryNCBI Gene:100126765Re-query CCDS DB by CCDS ID:57083.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 57083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177882.1 ENSMUSP00000136767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177882.1Link to Ensembl Protein Viewer:ENSMUSP00000136767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177882Re-query CCDS DB by Protein ID:ENSMUSP00000136767
Original member Current member NCBI NM_001177587.1 NP_001171058.1 Accepted alive Link to Nucleotide Sequence:NM_001177587.1Link to Protein Sequence:NP_001171058.1Re-query CCDS DB by Nucleotide ID:NM_001177587Re-query CCDS DB by Protein ID:NP_001171058Link to BLAST:NP_001171058.1

Chromosomal Locations for CCDS 57083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38417035 38417334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38418945 38418998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGATGTTTTTTATTTTAACTTTGCCACTACCATCAATGCTCACTGAAGGCAGGGTACTACCAGAGACTC
AGAAAGAACCCAAAATATCTGCTGATCACAAGACAAATGGGAATATTGTCTTTGAAGAGATTGACTGCAA
AAATATGAGAATTAACATAGAAGATGTTGGCCATAATTTACAAGGTTCCTACCAAATTAATATACAGTTT
CAAGGCTTATTCAATGATTTCCTTTTGAACACCTGTTCTTCTGTTTCACAAACAACTAACACTATGTTTA
TAATAGAAACAATGAACATAGAAATCTTTACTAGAATGTCCAATTCATGGAATAGTATTAGGCACAAAAC
CTAA

Translation (117 aa):
MMFFILTLPLPSMLTEGRVLPETQKEPKISADHKTNGNIVFEEIDCKNMRINIEDVGHNLQGSYQINIQF
QGLFNDFLLNTCSSVSQTTNTMFIIETMNIEIFTRMSNSWNSIRHKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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