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Report for CCDS56936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56936.1 Public Mus musculus 14 Gm3558 23 108 98 CCDS HistoryNCBI Gene:100041874Re-query CCDS DB by CCDS ID:56936.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163790.1 ENSMUSP00000130601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163790.1Link to Ensembl Protein Viewer:ENSMUSP00000130601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163790Re-query CCDS DB by Protein ID:ENSMUSP00000130601
Original member Current member NCBI NM_001270842.1 NP_001257771.1 Accepted alive Link to Nucleotide Sequence:NM_001270842.1Link to Protein Sequence:NP_001257771.1Re-query CCDS DB by Nucleotide ID:NM_001270842Re-query CCDS DB by Protein ID:NP_001257771Link to BLAST:NP_001257771.1

Chromosomal Locations for CCDS 56936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 7546285 7546294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7549791 7549973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7550650 7550781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7551732 7551894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 7552627 7552756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTTTTCCTGGCTGCTCAGGCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACAGAGA
AGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATGGTTCTGGAGAAGGCACAGGTCTGCTAG
AAATACTTCAACCCAAAATTCCAAAATGACTAAGAAGAGATCAAAAATAAATGAACTAGAAGAACTGAAA
TTGGATATGAGGAAGATCAGCAATGACATGGAGGAAATGTGTGGAATCCTGAACCTTTACATGTATGAGG
ATTTGAACTACAGGATGAACACTGAATTCAACATCATTAAATCACAACATGAGAAGACAATGTTGGATAT
GAATAAAATGATCCAGTCCATAATTGGTTCCATGCAGTACTCCAAGGAACTGATAGAAGATAACTATTCC
TACAGCATTAAGGAGGACCACCTCCTCCGTGAGTGCACTCAACTCCACGAAAACGTAAGGATATTACTGA
ATGAGAACAGAAGGCTGCTGGTGGAGCAGGCTGGCCACAAGTGTCCTGTGGGGAAGAAAAGAGGTTCTCT
GAGGAGGCCAGCAAGAACATCTGTGCCTCAAGTGCCAAGGAGCAGCAGTGTGATATAG

Translation (205 aa):
MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELK
LDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYS
YSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVPQVPRSSSVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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