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Report for CCDS983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
983.1 Public Homo sapiens 1 GABPB2 24 110 108 CCDS HistoryNCBI Gene:126626Re-query CCDS DB by CCDS ID:983.1Re-query CCDS DB by GeneID:126626See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368918.8 ENSP00000357914.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368918.8Link to Ensembl Protein Viewer:ENSP00000357914.3Re-query CCDS DB by Nucleotide ID:ENST00000368918Re-query CCDS DB by Protein ID:ENSP00000357914
Original member Current member NCBI NM_001323908.2 NP_001310837.1 Accepted alive Link to Nucleotide Sequence:NM_001323908.2Link to Protein Sequence:NP_001310837.1Re-query CCDS DB by Nucleotide ID:NM_001323908Re-query CCDS DB by Protein ID:NP_001310837Link to BLAST:NP_001310837.1
Original member Current member NCBI NM_144618.3 NP_653219.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144618.3Link to Protein Sequence:NP_653219.1Re-query CCDS DB by Nucleotide ID:NM_144618Re-query CCDS DB by Protein ID:NP_653219Link to BLAST:NP_653219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310837.1 448 Q8TAK5 448 100% 0 0
NP_653219.1 448 Q8TAK5 448 100% 0 0

Chromosomal Locations for CCDS 983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151088190 151088297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151090406 151090573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151093192 151093386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151097852 151098002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151103562 151103675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151107037 151107222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151117392 151117516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151117957 151118256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAA
CGTTGATGGCAAATGGCGCCCCATTCACCACAGACTGGCTTGGAACATCACCCCTCCACCTTGCAGCTCA
ATATGGTCATTATTCCACAGCAGAAGTACTCCTTCGAGCAGGTGTTAGCAGGGATGCCCGGACTAAAGTA
GACAGGACCCCCTTGCACATGGCTGCAGCCGATGGACATGCGCACATCGTGGAACTGCTTGTTCGGAATG
GTGCAGATGTGAATGCCAAGGACATGCTGAAGATGACAGCTTTGCATTGGGCCACAGAGCGCCACCATCG
AGATGTCGTAGAGTTACTTATCAAATATGGAGCTGATGTCCATGCTTTCAGCAAATTTGATAAATCAGCC
TTTGACATAGCTCTGGAGAAAAACAATGCTGAGATTTTGGTCATCCTCCAGGAAGCAATGCAGAATCAGG
TGAATGTTAATCCAGAGAGAGCCAACCCTGTGACTGACCCTGTGAGTATGGCTGCTCCATTCATCTTCAC
GTCGGGTGAGGTTGTTAACCTCGCAAGCCTTATTTCTTCAACCAACACCAAAACAACCTCAGGTGACCCC
CATGCCTCAACAGTACAGTTTTCAAATTCTACCACCTCAGTGCTGGCTACCCTTGCAGCTCTTGCTGAGG
CATCAGTCCCCCTCTCCAACTCACACAGAGCCACAGCCAATACAGAGGAAATTATAGAAGGAAATTCCGT
TGACTCATCAATCCAGCAAGTAATGGGGAGTGGAGGCCAGAGGGTCATCACCATAGTGACTGATGGAGTC
CCTCTGGGTAATATCCAAACTTCAATCCCTACTGGAGGCATTGGCCAGCCATTTATTGTAACTGTGCAAG
ATGGACAGCAAGTTCTAACTGTACCTGCTGGTAAGGTTGCAGAGGAGACTGTAATTAAAGAGGAAGAAGA
AGAGAAGTTGCCACTAACAAAGAAACCAAGGATAGGAGAGAAGACAAACAGTGTGGAGGAAAGCAAGGAA
GGCAATGAAAGAGAGCTACTACAGCAACAACTCCAGGAGGCCAATCGAAGAGCCCAGGAATACCGACACC
AGCTCCTAAAGAAAGAGCAGGAAGCAGAACAGTACCGTCTTAAGCTGGAGGCCATAGCCCGACAGCAGCC
CAATGGAGTTGATTTCACCATGGTTGAAGAGGTGGCTGAGGTAGATGCTGTAGTAGTCACAGAGGGGGAG
TTGGAAGAGAGAGAGACAAAAGTGACTGGGTCAGCAGGGACCACAGAGCCTCACACTAGAGTTTCCATGG
CAACTGTTTCATCTTAA

Translation (448 aa):
MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKV
DRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVVELLIKYGADVHAFSKFDKSA
FDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSMAAPFIFTSGEVVNLASLISSTNTKTTSGDP
HASTVQFSNSTTSVLATLAALAEASVPLSNSHRATANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGV
PLGNIQTSIPTGGIGQPFIVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKE
GNERELLQQQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTEGE
LEERETKVTGSAGTTEPHTRVSMATVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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