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Report for CCDS9593.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9593.2 Under review, update Homo sapiens 14 SLC22A17 24 110 108 CCDS HistoryNCBI Gene:51310Re-query CCDS DB by CCDS ID:9593.2Re-query CCDS DB by GeneID:51310See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 9593.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397267.6 ENSP00000380437.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397267.6Link to Ensembl Protein Viewer:ENSP00000380437.2Re-query CCDS DB by Nucleotide ID:ENST00000397267Re-query CCDS DB by Protein ID:ENSP00000380437
Original member Current member NCBI NM_020372.4 NP_065105.3 Pending alive Link to Nucleotide Sequence:NM_020372.4Link to Protein Sequence:NP_065105.3Re-query CCDS DB by Nucleotide ID:NM_020372Re-query CCDS DB by Protein ID:NP_065105Link to BLAST:NP_065105.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065105.3 649 Q8WUG5-1 649 100% 0 0

Chromosomal Locations for CCDS 9593.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23346648 23346936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23347101 23347212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23347460 23347731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23347891 23347996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23348161 23348306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23348506 23348671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23349272 23349426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23351752 23351855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23351948 23352451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23352646 23352741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (1950 nt):
CTGGCTCCCCGGGTGGCCACCGGGACCCCCGAGCCCAATGGCGGGGGCGGCGGCAAAATCGACAACACTG
TAGAGATCACCCCCACCTCCAACGGACAGGTCGGGACCCTCGGAGATGCGGTGCCCACGGAGCAGCTGCA
GGGTGAGCGGGAGCGCGAGCGGGAGGGGGAGGGAGACGCGGGCGGCGACGGACTGGGCAGCAGCCTGTCG
CTGGCCGTGCCCCCAGGCCCCCTCAGCTTTGAGGCGCTGCTCGCCCAGGTGGGGGCGCTGGGCGGCGGCC
AGCAGCTGCAGCTCGGCCTCTGCTGCCTGCCGGTGCTCTTCGTGGCTCTGGGCATGGCCTCGGACCCCAT
CTTCACGCTGGCGCCCCCGCTGCATTGCCACTACGGGGCCTTCCCCCCTAATGCCTCTGGCTGGGAGCAG
CCTCCCAATGCCAGCGGCGTCAGCGTCGCCAGCGCTGCCCTAGCAGCCAGCGCCGCCAGCCGTGTCGCCA
CCAGTACCGACCCCTCGTGCAGCGGCTTCGCCCCGCCGGACTTCAACCATTGCCTCAAGGATTGGGACTA
TAATGGCCTTCCTGTGCTCACCACCAACGCCATCGGCCAGTGGGATCTGGTGTGTGACCTGGGCTGGCAG
GTGATCCTGGAGCAGATCCTCTTCATCTTGGGCTTTGCCTCCGGCTACCTGTTCCTGGGTTACCCCGCAG
ACAGATTTGGCCGTCGCGGGATTGTGCTGCTGACCTTGGGGCTGGTGGGCCCCTGTGGAGTAGGAGGGGC
TGCTGCAGGCTCCTCCACAGGCGTCATGGCCCTCCGATTCCTCTTGGGCTTTCTGCTTGCCGGTGTTGAC
CTGGGTGTCTACCTGATGCGCCTGGAGCTGTGCGACCCAACCCAGAGGCTTCGGGTGGCCCTGGCAGGGG
AGTTGGTGGGGGTGGGAGGGCACTTCCTGTTCCTGGGCCTGGCCCTTGTCTCTAAGGATTGGCGATTCCT
ACAGCGAATGATCACCGCTCCCTGCATCCTCTTCCTGTTTTATGGCTGGCCTGGTTTGTTCCTGGAGTCC
GCACGGTGGCTGATAGTGAAGCGGCAGATTGAGGAGGCTCAGTCTGTGCTGAGGATCCTGGCTGAGCGAA
ACCGGCCCCATGGGCAGATGCTGGGGGAGGAGGCCCAGGAGGCCCTGCAGGACCTGGAGAATACCTGCCC
TCTCCCTGCAACATCCTCCTTTTCCTTTGCTTCCCTCCTCAACTACCGCAACATCTGGAAAAATCTGCTT
ATCCTGGGCTTCACCAACTTCATTGCCCATGCCATTCGCCACTGCTACCAGCCTGTGGGAGGAGGAGGGA
GCCCATCGGACTTCTACCTGTGCTCTCTGCTGGCCAGCGGCACCGCAGCCCTGGCCTGTGTCTTCCTGGG
GGTCACCGTGGACCGATTTGGCCGCCGGGGCATCCTTCTTCTCTCCATGACCCTTACCGGCATTGCTTCC
CTGGTCCTGCTGGGCCTGTGGGATTGTGAGCATCCTATCTTCCCCACAGTGTGGGCTCAACAAGGGAACC
CCAACAGAGATCTGAACGAGGCTGCCATCACCACTTTCTCTGTCCTTGGGCTCTTCTCCTCCCAAGCTGC
CGCCATCCTCAGCACCCTCCTTGCTGCTGAGGTCATCCCCACCACTGTCCGGGGCCGTGGCCTGGGCCTG
ATCATGGCTCTAGGGGCGCTTGGAGGACTGAGCGGCCCGGCCCAGCGCCTCCACATGGGCCATGGAGCCT
TCCTGCAGCACGTGGTGCTGGCGGCCTGCGCCCTCCTCTGCATTCTCAGCATTATGCTGCTGCCGGAGAC
CAAGCGCAAGCTCCTGCCCGAGGTGCTCCGGGACGGGGAGCTGTGTCGCCGGCCTTCCCTGCTGCGGCAG
CCACCCCCTACCCGCTGTGACCACGTCCCGCTGCTTGCCACCCCCAACCCTGCCCTCTGA

Translation (649 aa):
MAPRVATGTPEPNGGGGGKIDNTVEITPTSNGQVGTLGDAVPTEQLQGEREREREGEGDAGGDGLGSSLS
LAVPPGPLSFEALLAQVGALGGGQQLQLGLCCLPVLFVALGMASDPIFTLAPPLHCHYGAFPPNASGWEQ
PPNASGVSVASAALAASAASRVATSTDPSCSGFAPPDFNHCLKDWDYNGLPVLTTNAIGQWDLVCDLGWQ
VILEQILFILGFASGYLFLGYPADRFGRRGIVLLTLGLVGPCGVGGAAAGSSTGVMALRFLLGFLLAGVD
LGVYLMRLELCDPTQRLRVALAGELVGVGGHFLFLGLALVSKDWRFLQRMITAPCILFLFYGWPGLFLES
ARWLIVKRQIEEAQSVLRILAERNRPHGQMLGEEAQEALQDLENTCPLPATSSFSFASLLNYRNIWKNLL
ILGFTNFIAHAIRHCYQPVGGGGSPSDFYLCSLLASGTAALACVFLGVTVDRFGRRGILLLSMTLTGIAS
LVLLGLWDCEHPIFPTVWAQQGNPNRDLNEAAITTFSVLGLFSSQAAAILSTLLAAEVIPTTVRGRGLGL
IMALGALGGLSGPAQRLHMGHGAFLQHVVLAACALLCILSIMLLPETKRKLLPEVLRDGELCRRPSLLRQ
PPPTRCDHVPLLATPNPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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