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Report for CCDS9523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9523.1 Public Homo sapiens 13 SOX1 24 110 108 CCDS HistoryNCBI Gene:6656Re-query CCDS DB by CCDS ID:9523.1Re-query CCDS DB by GeneID:6656See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330949.3 ENSP00000330218.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330949.3Link to Ensembl Protein Viewer:ENSP00000330218.1Re-query CCDS DB by Nucleotide ID:ENST00000330949Re-query CCDS DB by Protein ID:ENSP00000330218
Original member Current member NCBI NM_005986.3 NP_005977.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005986.3Link to Protein Sequence:NP_005977.2Re-query CCDS DB by Nucleotide ID:NM_005986Re-query CCDS DB by Protein ID:NP_005977Link to BLAST:NP_005977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005977.2 391 O00570 391 100% 0 0

Chromosomal Locations for CCDS 9523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112067659 112068834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTACAGCATGATGATGGAGACCGACCTGCACTCGCCCGGCGGCGCCCAGGCCCCCACGAACCTCTCGG
GCCCCGCCGGGGCGGGCGGCGGCGGGGGCGGAGGCGGGGGCGGCGGCGGCGGCGGGGGCGCCAAGGCCAA
CCAGGACCGGGTCAAACGGCCCATGAACGCCTTCATGGTGTGGTCCCGCGGGCAGCGGCGCAAGATGGCC
CAGGAGAACCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTGGGGGCCGAGTGGAAGGTCATGTCCG
AGGCCGAGAAGCGGCCGTTCATCGACGAGGCCAAGCGGCTGCGCGCGCTGCACATGAAGGAGCACCCGGA
TTACAAGTACCGGCCGCGCCGCAAGACCAAGACGCTGCTCAAGAAGGACAAGTACTCGCTGGCCGGCGGG
CTCCTGGCGGCCGGCGCGGGTGGCGGCGGCGCGGCTGTGGCCATGGGCGTGGGCGTGGGCGTGGGCGCGG
CGGCCGTGGGCCAGCGCCTGGAGAGCCCAGGCGGCGCGGCGGGCGGCGGCTACGCGCACGTCAACGGCTG
GGCCAACGGCGCCTACCCCGGCTCGGTGGCGGCGGCGGCGGCGGCCGCGGCCATGATGCAGGAGGCGCAG
CTGGCCTACGGGCAGCACCCGGGCGCGGGCGGCGCGCACCCGCACGCGCACCCCGCGCACCCGCACCCGC
ACCACCCGCACGCGCACCCGCACAACCCGCAGCCCATGCACCGCTACGACATGGGCGCGCTGCAGTACAG
CCCCATCTCCAACTCGCAGGGCTACATGAGCGCGTCGCCCTCGGGCTACGGCGGCCTCCCCTACGGCGCC
GCGGCCGCCGCCGCCGCCGCTGCGGGCGGCGCGCACCAGAACTCGGCCGTGGCGGCGGCGGCGGCGGCGG
CGGCCGCGTCGTCGGGCGCCCTGGGCGCGCTGGGCTCTCTGGTGAAGTCGGAGCCCAGCGGCAGCCCGCC
CGCCCCAGCGCACTCGCGGGCGCCGTGCCCCGGGGACCTGCGCGAGATGATCAGCATGTACTTGCCCGCC
GGCGAGGGGGGCGACCCGGCGGCGGCAGCAGCGGCCGCGGCGCAGAGCCGGCTGCACTCGCTGCCGCAGC
ACTACCAGGGCGCGGGCGCGGGCGTGAACGGCACGGTGCCCCTGACGCACATCTAG

Translation (391 aa):
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKMA
QENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGG
LLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQ
LAYGQHPGAGGAHPHAHPAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGA
AAAAAAAAGGAHQNSAVAAAAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPA
GEGGDPAAAAAAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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