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Report for CCDS94055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94055.1 Public Homo sapiens 7 C7orf78 24 110 108 CCDS HistoryNCBI Gene:102725191Re-query CCDS DB by CCDS ID:94055.1Re-query CCDS DB by GeneID:102725191See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 94055.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000636804.2 ENSP00000490444.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000636804.2Link to Ensembl Protein Viewer:ENSP00000490444.1Re-query CCDS DB by Nucleotide ID:ENST00000636804Re-query CCDS DB by Protein ID:ENSP00000490444
Original member Current member NCBI NM_001386514.1 NP_001373443.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386514.1Link to Protein Sequence:NP_001373443.1Re-query CCDS DB by Nucleotide ID:NM_001386514Re-query CCDS DB by Protein ID:NP_001373443Link to BLAST:NP_001373443.1

Chromosomal Locations for CCDS 94055.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12504544 12504546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12522971 12523426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12525820 12525904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12528902 12529044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12531013 12531092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12540920 12540923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGATTCCTCCATGTGAAAATGCCCCCCACATAATATACCATGAGTCTCAGAGAGGCACAAGAGATAGGG
ATATTGCAAAGAGGCTGCAATATCCTTCACGACAGGATCTCAACTCCAAATGGAAAAAAAGTGTTCTGCA
ACCTCCACAATGTAAAATGAAAGTTAATGTATGGGAAATAAAGCCTCCTGATTTTAGCTACAAACTGTAT
ACATCTTTGAGAATTCCAGAAAGATCATCAAAACCAATTAAGGAAGAAAAAAGGAGGAAAAAAATCAGTT
TTCCAGAAACAATGCTTCACTTGCCCAGCATAAGGAATCATCCTAAGGAGGTTACAGCTCCTAAATTTAT
AACTACATTTCCACATCTGGATTTACAAAAAGCAAAGTTAATGTTTGTGAAGAGTGGACAATATCCAAGG
GGTGTATATGTCAATCCCAAACCACATGACTTTCGACAGTACCAACCTGGTTTACCAAACTTTGAGACAA
CTTATGAAAAGGACCCCTTTGGATTAAAATTTAAATCACAACACTTAAGTACAGTACATGGGTACCAGTT
ACCGAAAGATGATAAACAGAAGACTAGTACAGAAAGATTTATCACCCACAAGCATTGTGAATGCACCTGG
GATTCAAAACTAATTTTGACGAAAGCCCCATGGCCTGTTAGATCTGCTTCATATACAAGACATAGAAGGC
AGCGTGATGCATACAGTGCATTTATGGATCGTGTGGAAGAAAAGTTTACAAAGATATGCAAGAGCAGATA
G

Translation (256 aa):
MIPPCENAPHIIYHESQRGTRDRDIAKRLQYPSRQDLNSKWKKSVLQPPQCKMKVNVWEIKPPDFSYKLY
TSLRIPERSSKPIKEEKRRKKISFPETMLHLPSIRNHPKEVTAPKFITTFPHLDLQKAKLMFVKSGQYPR
GVYVNPKPHDFRQYQPGLPNFETTYEKDPFGLKFKSQHLSTVHGYQLPKDDKQKTSTERFITHKHCECTW
DSKLILTKAPWPVRSASYTRHRRQRDAYSAFMDRVEEKFTKICKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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