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Report for CCDS93896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93896.1 Public Homo sapiens 6 SMIM29 24 110 108 CCDS HistoryNCBI Gene:221491Re-query CCDS DB by CCDS ID:93896.1Re-query CCDS DB by GeneID:221491See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394990.8 ENSP00000378441.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394990.8Link to Ensembl Protein Viewer:ENSP00000378441.5Re-query CCDS DB by Nucleotide ID:ENST00000394990Re-query CCDS DB by Protein ID:ENSP00000378441
Original member Current member EBI ENST00000468145.1 ENSP00000418884.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468145.1Link to Ensembl Protein Viewer:ENSP00000418884.2Re-query CCDS DB by Nucleotide ID:ENST00000468145Re-query CCDS DB by Protein ID:ENSP00000418884
Original member Current member NCBI NM_001008704.4 NP_001008704.2 Accepted alive Link to Nucleotide Sequence:NM_001008704.4Link to Protein Sequence:NP_001008704.2Re-query CCDS DB by Nucleotide ID:NM_001008704Re-query CCDS DB by Protein ID:NP_001008704Link to BLAST:NP_001008704.2
Original member Current member NCBI NM_001287396.3 NP_001274325.2 Accepted alive Link to Nucleotide Sequence:NM_001287396.3Link to Protein Sequence:NP_001274325.2Re-query CCDS DB by Nucleotide ID:NM_001287396Re-query CCDS DB by Protein ID:NP_001274325Link to BLAST:NP_001274325.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008704.2 82 Q86T20-2 82 100% 0 0
NP_001274325.2 82 Q86T20-2 82 100% 0 0

Chromosomal Locations for CCDS 93896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34246803 34246868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247044 34247149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247467 34247492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247741 34247791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (249 nt):
ATGAGTAACACCACTGTGCCCAATGCCCCCCAGGCCAACAGCGACTCCATGGTAATGTATGTACAGAAGA
AAAAGCGGGTGGACCGGCTGCGCCATCACCTGCTCCCCATGTACAGCTATGACCCAGCTGAGGAACTGCA
TGAGGCTGAGCAGGAGCTGCTCTCTGACATGGGAGACCCCAAGGTGGTACATGGCTGGCAGAGTGGCTAC
CAGCACAAGCGGATGCCACTGCTGGATGTCAAGACGTGA

Translation (82 aa):
MSNTTVPNAPQANSDSMVMYVQKKKRVDRLRHHLLPMYSYDPAEELHEAEQELLSDMGDPKVVHGWQSGY
QHKRMPLLDVKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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