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Report for CCDS93249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93249.1 Public Homo sapiens 3 TRAK1 24 110 108 CCDS HistoryNCBI Gene:22906Re-query CCDS DB by CCDS ID:93249.1Re-query CCDS DB by GeneID:22906See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396175.5 ENSP00000379478.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396175.5Link to Ensembl Protein Viewer:ENSP00000379478.1Re-query CCDS DB by Nucleotide ID:ENST00000396175Re-query CCDS DB by Protein ID:ENSP00000379478
Current member NCBI NM_001410741.1 NP_001397670.1 Accepted alive Link to Nucleotide Sequence:NM_001410741.1Link to Protein Sequence:NP_001397670.1Re-query CCDS DB by Nucleotide ID:NM_001410741Re-query CCDS DB by Protein ID:NP_001397670Link to BLAST:NP_001397670.1

Chromosomal Locations for CCDS 93249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 42160362 42160473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42176814 42176890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42184685 42184801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42188045 42188145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42189016 42189124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42191558 42191636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42193075 42193205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42193824 42193898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42194804 42194941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42199177 42199253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42200818 42201054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42202436 42202752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42209767 42209985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42219494 42219596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 42222942 42223737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2688 nt):
ATGTCCCTGCGAGACAAGGGCGGGGAAGAAGAATGTTTTGAATACGACTGCCAGGATGAAGAGAGGAAGC
CAACCCACAGGCAGCATGACACCCAGGACCTCTTGGAAGAGGTTTTATGTGCTGAAAGAGTTGGCCAGAT
GACTAAGACATATAATGACATAGATGCTGTCACTCGGCTTCTTGAGGAGAAAGAGCGGGATTTAGAATTG
GCCGCTCGCATCGGCCAGTCGTTGTTGAAGAAGAACAAGACCCTAACCGAGAGGAACGAGCTGCTGGAGG
AGCAGGTGGAACACATCAGGGAGGAGGTGTCTCAGCTCCGGCATGAGCTGTCCATGAAGGATGAGCTGCT
TCAGTTCTACACCAGCGCTGCGGAGGAGAGTGAGCCCGAGTCCGTTTGCTCAACCCCGTTGAAGAGGAAT
GAGTCGTCCTCCTCAGTCCAGAATTACTTTCATTTGGATTCTCTTCAAAAGAAGCTGAAAGACCTTGAAG
AGGAGAATGTTGTACTTCGATCCGAGGCCAGCCAGCTGAAGACAGAGACCATCACCTATGAGGAGAAGGA
GCAGCAGCTGGTCAATGACTGCGTGAAGGAGCTGAGGGATGCCAATGTCCAGATTGCTAGTATCTCAGAG
GAACTGGCCAAGAAGACGGAAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCTATCGCAAATAG
TTGATTTGCAGAAAAAGGCAAAAGCTTGCGCAGTGGAAAATGAAGAACTTGTCCAGCATCTGGGGGCTGC
TAAGGATGCCCAGCGGCAGCTCACAGCCGAGCTGCGTGAGCTGGAGGACAAGTACGCAGAGTGCATGGAG
ATGCTGCATGAGGCGCAGGAGGAGCTGAAGAACCTCCGGAACAAAACCATGCCCAATACCACGTCTCGGC
GCTACCACTCACTGGGCCTGTTTCCCATGGATTCCTTGGCAGCAGAGATTGAGGGAACGATGCGCAAGGA
GCTGCAGTTGGAAGAGGCCGAGTCTCCAGACATCACTCACCAGAAGCGTGTCTTTGAGACAGTAAGAAAC
ATCAACCAGGTTGTCAAGCAGAGATCTCTGACCCCTTCTCCCATGAACATCCCCGGCTCCAACCAGTCCT
CGGCCATGAACTCCCTCCTGTCCAGCTGCGTCAGCACCCCCCGGTCCAGCTTCTACGGCAGCGACATAGG
CAACGTCGTCCTCGACAACAAGACCAACAGCATCATTCTGGAAACAGAGGCAGCCGACCTGGGAAACGAT
GAGCGGAGTAAGAAGCCGGGGACGCCGGGCACCCCAGGCTCCCACGACCTGGAGACGGCGCTGAGGCGGC
TGTCCCTGCGCCGGGAGAACTACCTCTCGGAGAGGAGGTTCTTTGAGGAGGAGCAAGAGAGGAAGCTCCA
GGAGCTGGCGGAGAAGGGCGAGCTGCGCAGCGGCTCCCTCACACCCACTGAGAGCATCATGTCCCTGGGC
ACGCACTCCCGCTTCTCCGAGTTCACCGGCTTCTCTGGCATGTCCTTCAGCAGCCGCTCCTACCTGCCTG
AGAAGCTCCAGATCGTGAAGCCGCTGGAAGGTTCCGCCACACTTCACCACTGGCAGCAGTTGGCCCAACC
TCACCTTGGGGGCATCCTGGACCCCCGGCCCGGTGTGGTCACCAAGGGCTTCCGGACGCTGGATGTTGAC
CTGGACGAAGTGTACTGCCTTAACGACTTTGAAGAAGATGACACAGGTGACCACATTTCTCTCCCACGCC
TAGCTACCTCCACTCCAGTTCAGCACCCAGAGACCTCAGCGCACCATCCTGGGAAGTGCATGTCTCAGAC
CAACTCCACCTTCACCTTCACCACCTGTCGCATCCTGCATCCTTCAGATGAGCTCACTCGGGTCACACCA
AGCCTTAACTCAGCCCCAACTCCAGCTTGTGGCAGCACCAGCCACTTGAAATCCACGCCGGTGGCCACAC
CATGCACTCCACGGAGACTGAGCCTGGCTGAGTCCTTCACTAACACCCGTGAGTCCACGACCACCATGAG
CACATCCCTGGGGCTCGTGTGGCTGTTGAAGGAGCGGGGCATTTCTGCTGCCGTGTACGACCCCCAGAGC
TGGGACAGGGCCGGCCGGGGCTCCCTCCTGCACTCCTACACGCCCAAGATGGCTGTGATCCCCTCTACTC
CGCCGAACTCGCCTATGCAGACACCCACATCCTCCCCACCCTCCTTTGAGTTCAAGTGCACGAGCCCTCC
CTACGACAATTTCCTGGCTTCCAAGCCAGCCAGCTCCATCCTGAGGGAAGTGAGAGAAAAGAACGTCCGC
AGCAGCGAGAGCCAGACCGACGTGTCCGTCTCCAACCTCAACCTCGTGGACAAAGTCAGGAGGTTTGGGG
TGGCCAAAGTGGTGAACTCAGGGCGAGCCCATGTCCCCACCTTGACTGAGGAGCAGGGACCCCTCCTCTG
TGGGCCCCCGGGGCCAGCACCAGCCCTTGTTCCCAGAGGCCTGGTACCTGAGGGCCTGCCCCTCAGATGC
CCCACTGTCACCAGTGCCATCGGTGGGCTGCAGCTCAATAGTGGCATCCGGCGGAATCGCAGCTTCCCCA
CCATGGTGGGATCTAGCATGCAGATGAAAGCTCCTGTGACTCTCACCTCGGGCATCTTGATGGGTGCTAA
GCTCTCCAAACAAACTAGCTTACGGTGA

Translation (895 aa):
MSLRDKGGEEECFEYDCQDEERKPTHRQHDTQDLLEEVLCAERVGQMTKTYNDIDAVTRLLEEKERDLEL
AARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRN
ESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISE
ELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECME
MLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRN
INQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDIGNVVLDNKTNSIILETEAADLGND
ERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLQELAEKGELRSGSLTPTESIMSLG
THSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVD
LDEVYCLNDFEEDDTGDHISLPRLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTP
SLNSAPTPACGSTSHLKSTPVATPCTPRRLSLAESFTNTRESTTTMSTSLGLVWLLKERGISAAVYDPQS
WDRAGRGSLLHSYTPKMAVIPSTPPNSPMQTPTSSPPSFEFKCTSPPYDNFLASKPASSILREVREKNVR
SSESQTDVSVSNLNLVDKVRRFGVAKVVNSGRAHVPTLTEEQGPLLCGPPGPAPALVPRGLVPEGLPLRC
PTVTSAIGGLQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLSKQTSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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