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Report for CCDS9324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9324.1 Public Homo sapiens 13 POLR1D 24 110 108 CCDS HistoryNCBI Gene:51082Re-query CCDS DB by CCDS ID:9324.1Re-query CCDS DB by GeneID:51082See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399697.7 ENSP00000382604.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399697.7Link to Ensembl Protein Viewer:ENSP00000382604.3Re-query CCDS DB by Nucleotide ID:ENST00000399697Re-query CCDS DB by Protein ID:ENSP00000382604
Original member Current member NCBI NM_152705.3 NP_689918.1 Accepted alive Link to Nucleotide Sequence:NM_152705.3Link to Protein Sequence:NP_689918.1Re-query CCDS DB by Nucleotide ID:NM_152705Re-query CCDS DB by Protein ID:NP_689918Link to BLAST:NP_689918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689918.1 122 P0DPB5-1 122 100% 0 0

Chromosomal Locations for CCDS 9324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27621984 27622009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27648379 27648453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665686 27665953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGGAAGAGGATCAGGAGCTGGAGAGGAAAGCAATAGAAGAACTGCTTAAGGAGGCAAAACGTGGGAAAA
CTAGAGCTGAAACAATGGGACCCATGGGTTGGATGAAGTGTCCTCTTGCTAGCACCAATAAAAGATTTCT
AATTAACACAATTAAAAACACATTGCCCTCTCATAAAGAGCAAGACCATGAACAAAAAGAGGGCGATAAG
GAACCAGCGAAGAGCCAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCATCCTTACAAGCACA
GCTTCCGCGCTCGAGGTTCCGCCAGTTACTCCCCGCCACGAAAGCGGAGCAGCCAGGACAAGTACGAAAA
GCGGTCCAACCGGCGGTGA

Translation (122 aa):
MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKEQDHEQKEGDK
EPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSNRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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