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Report for CCDS92032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92032.1 Public Homo sapiens 15 CLN6 24 110 108 CCDS HistoryNCBI Gene:54982Re-query CCDS DB by CCDS ID:92032.1Re-query CCDS DB by GeneID:54982See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538696.5 ENSP00000445770.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538696.5Link to Ensembl Protein Viewer:ENSP00000445770.1Re-query CCDS DB by Nucleotide ID:ENST00000538696Re-query CCDS DB by Protein ID:ENSP00000445770
Current member NCBI NM_001411068.1 NP_001397997.1 Accepted alive Link to Nucleotide Sequence:NM_001411068.1Link to Protein Sequence:NP_001397997.1Re-query CCDS DB by Nucleotide ID:NM_001411068Re-query CCDS DB by Protein ID:NP_001397997Link to BLAST:NP_001397997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001397997.1 343 Q9NWW5-2 343 100% 0 0

Chromosomal Locations for CCDS 92032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 68208140 68208410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68209637 68209759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68211263 68211318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68211675 68211863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68214290 68214388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68218536 68218650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68256690 68256868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCAGCCGTTGCCGGGAAGGAGCGGCGAGCGAGAGGCAGGCCCCGGCCAGAGACACTGGGAGCCATCC
CTAGGAGGGAGGGAGGCGAGGCGGGCTTGAGCCGAGCCTTCAAGCCACTGGCGCAGGCGCCATTGTCCTG
TGAGACTTCGCTGAGAAAACTCAAATTCAAAGGTAAAAAGCATGGCTCTGTGAGCGCTGATGAGGCTGCC
CGCACGGCTCCCTTCCACCTCGACCTCTGGTTCTACTTCACACTGCAGAACTGGGTTCTGGACTTTGGGC
GTCCCATTGCCATGCTGGTATTCCCTCTCGAGTGGTTTCCACTCAACAAGCCCAGTGTTGGGGACTACTT
CCACATGGCCTACAACGTCATCACGCCCTTTCTCTTGCTCAAGCTCATCGAGCGGTCCCCCCGCACCCTG
CCACGCTCCATCACGTACGTGAGCATCATCATCTTCATCATGGGTGCCAGCATCCACCTGGTGGGTGACT
CTGTCAACCACCGCCTGCTCTTCAGTGGCTACCAGCACCACCTGTCTGTCCGTGAGAACCCCATCATCAA
GAATCTCAAGCCGGAGACGCTGATCGACTCCTTTGAGCTGCTCTACTATTATGATGAGTACCTGGGTCAC
TGCATGTGGTACATCCCCTTCTTCCTCATCCTCTTCATGTACTTCAGCGGCTGCTTTACTGCCTCTAAAG
CTGAGAGCTTGATTCCAGGGCCTGCCCTGCTCCTGGTGGCACCCAGTGGCCTGTACTACTGGTACCTGGT
CACCGAGGGCCAGATCTTCATCCTCTTCATCTTCACCTTCTTCGCCATGCTGGCCCTCGTCCTGCACCAG
AAGCGCAAGCGCCTCTTCCTGGACAGCAACGGCCTCTTCCTCTTCTCCTCCTTCGCACTGACCCTCTTGC
TTGTGGCGCTCTGGGTCGCCTGGCTGTGGAATGACCCTGTTCTCAGGAAGAAGTACCCGGGTGTCATCTA
CGTCCCTGAGCCCTGGGCTTTCTACACCCTTCACGTCAGCAGTCGGCACTGA

Translation (343 aa):
MAAVAGKERRARGRPRPETLGAIPRREGGEAGLSRAFKPLAQAPLSCETSLRKLKFKGKKHGSVSADEAA
RTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTL
PRSITYVSIIIFIMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGH
CMWYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQ
KRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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