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Report for CCDS9181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9181.1 Public Homo sapiens 12 HRK 24 110 108 CCDS HistoryNCBI Gene:8739Re-query CCDS DB by CCDS ID:9181.1Re-query CCDS DB by GeneID:8739See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 9181.1
This CCDS ID represents the protein described in PMID: 9130713 and 9228060. This transcript is supported by BF510077.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously PMID: 18008329. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 9181.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257572.5 ENSP00000257572.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257572.5Link to Ensembl Protein Viewer:ENSP00000257572.4Re-query CCDS DB by Nucleotide ID:ENST00000257572Re-query CCDS DB by Protein ID:ENSP00000257572
Original member Current member NCBI NM_003806.4 NP_003797.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003806.4Link to Protein Sequence:NP_003797.1Re-query CCDS DB by Nucleotide ID:NM_003806Re-query CCDS DB by Protein ID:NP_003797Link to BLAST:NP_003797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003797.1 91 O00198 91 100% 0 0

Chromosomal Locations for CCDS 9181.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 116881032 116881307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGTGCCCGTGCCCCCTGCACCGCGGCCGCGGCCCCCCGGCCGTGTGCGCCTGCAGCGCGGGTCGCCTGG
GGCTGCGCTCGTCCGCCGCGCAGCTCACCGCCGCCCGGCTCAAGGCGCTAGGCGACGAGCTGCACCAGCG
CACCATGTGGCGGCGCCGCGCGCGGAGCCGGAGGGCGCCGGCGCCCGGCGCGCTCCCCACCTACTGGCCT
TGGCTGTGCGCGGCCGCGCAGGTGGCGGCGCTGGCGGCCTGGCTGCTCGGCAGGCGGAACTTGTAG

Translation (91 aa):
MCPCPLHRGRGPPAVCACSAGRLGLRSSAAQLTAARLKALGDELHQRTMWRRRARSRRAPAPGALPTYWP
WLCAAAQVAALAAWLLGRRNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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