NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9045.1 Public Homo sapiens 12 MRPL42 24 110 108 CCDS HistoryNCBI Gene:28977Re-query CCDS DB by CCDS ID:9045.1Re-query CCDS DB by GeneID:28977See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552217.6 ENSP00000447547.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552217.6Link to Ensembl Protein Viewer:ENSP00000447547.1Re-query CCDS DB by Nucleotide ID:ENST00000552217Re-query CCDS DB by Protein ID:ENSP00000447547
Original member Current member EBI ENST00000549561.6 ENSP00000449392.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549561.6Link to Ensembl Protein Viewer:ENSP00000449392.1Re-query CCDS DB by Nucleotide ID:ENST00000549561Re-query CCDS DB by Protein ID:ENSP00000449392
Original member Current member EBI ENST00000549982.6 ENSP00000449884.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000549982.6Link to Ensembl Protein Viewer:ENSP00000449884.1Re-query CCDS DB by Nucleotide ID:ENST00000549982Re-query CCDS DB by Protein ID:ENSP00000449884
Original member Current member NCBI NM_014050.4 NP_054769.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014050.4Link to Protein Sequence:NP_054769.1Re-query CCDS DB by Nucleotide ID:NM_014050Re-query CCDS DB by Protein ID:NP_054769Link to BLAST:NP_054769.1
Original member Current member NCBI NM_172177.5 NP_751917.1 Accepted alive Link to Nucleotide Sequence:NM_172177.5Link to Protein Sequence:NP_751917.1Re-query CCDS DB by Nucleotide ID:NM_172177Re-query CCDS DB by Protein ID:NP_751917Link to BLAST:NP_751917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054769.1 142 Q9Y6G3 142 100% 0 0
NP_751917.1 142 Q9Y6G3 142 100% 0 0

Chromosomal Locations for CCDS 9045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 93469286 93469355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93476954 93477017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93479388 93479472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93487497 93487660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93501176 93501221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCTGTAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTGAAACATTTATTTCCAGTCCAAA
ATGGAGCTTTATATTGTGTTTGTCATAAATCTACGTATTCTCCTCTACCAGATGACTATAATTGCAACGT
AGAGCTTGCTCTGACTTCTGATGGCAGGACAATAGTATGCTACCACCCTTCTGTGGACATTCCATATGAA
CACACAAAACCTATCCCTCGGCCAGATCCTGTGCATAATAATGAAGAAACACATGATCAAGTGCTGAAAA
CCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACCTATGATAGAACAACTTAGCAAAATGTTCTT
TACTACTAAGCACCGTTGGTATCCTCATGGACGGTATCACAGATGTCGTAAGAATCTGAATCCTCCAAAA
GACAGATGA

Translation (142 aa):
MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVCYHPSVDIPYE
HTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPPK
DR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH