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Report for CCDS90266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90266.1 Public Mus musculus 7 Il16 23 108 98 CCDS HistoryNCBI Gene:16170Re-query CCDS DB by CCDS ID:90266.1Re-query CCDS DB by GeneID:16170See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145610.7 ENSMUSP00000146496.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145610.7Link to Ensembl Protein Viewer:ENSMUSP00000146496.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145610Re-query CCDS DB by Protein ID:ENSMUSP00000146496
Original member Current member NCBI NM_001360089.1 NP_001347018.1 Accepted alive Link to Nucleotide Sequence:NM_001360089.1Link to Protein Sequence:NP_001347018.1Re-query CCDS DB by Nucleotide ID:NM_001360089Re-query CCDS DB by Protein ID:NP_001347018Link to BLAST:NP_001347018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347018.1 624 O54824-2 624 100% 0 0

Chromosomal Locations for CCDS 90266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 83643889 83644076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83645828 83645950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83646302 83646560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83648715 83648816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83650881 83651049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83651879 83652912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGGACTATAGCTTTGATATCACTGCTGAAGACCCTTGGGTTAGAATTTCCGACTGCATCAAAAACTTAT
TTAGCCCCATCATGAGTGAGAACCATAGCCATACACCACTACAGCCCAACACCAGCCTTGGTGAAGAGGA
TGGGACACAGGGCTGTCCAGAGGGGGGCCTGTCAAAAATGGACGCTGCCAATGGTGCTCCCAGAGTTTAC
AAGTCAGCAGATGGCAGCACTGTGAAGAAGGGGCCTCCAGTAGCCCCAAAGCCAGCTTGGTTTCGGCAGA
GCTTGAAAGGTCTGAGGAATCGTGCCCCAGACCCCAGAAGACCCCCGGAAGTAGCCTCAGCCATTCAGCC
TACACCAGTTTCTAGGGACCCACCAGGGCCACAGCCTCAGGCCTCTTCCTCCATCAGGCAGAGAATCAGC
TCCTTTGAAAACTTTGGCTCCTCACAATTGCCAGACAGAGGAGTCCAGAGACTGAGCCTGCAGCCCAGCT
CTGGGGAGACCACCAAATTTCCAGGAAAGCAAGATGGAGGACGATTTTCTGGTCTCCTGGGTCAAGGGGC
TACAGTAACAGCTAAGCACAGACAGACAGAGGTAGAGTCTATGTCCACAACCTTCCCTAACTCCTCAGAG
GTCAGGGACCCAGGTTTGCCTGAGTCTCCTCCCCCAGGTCAGCGACCCAGCACAAAAGCTTTGTCTCCAG
ACCCTCTCTTGAGACTGTTGACTACACAATCCGAGGATACTCAAGGACCAGGTCTCAAGATGCCAAGTCA
GCGGGCACGGAGCTTCCCCCTGACCAGGACCCAGTCCTGCGAGACAAAGCTGTTGGATGAAAAGGCCAGT
AAGCTTTACTCCATCAGCAGCCAGCTATCATCTGCTGTCATGAAATCCCTGCTGTGCCTTCCATCTTCAG
TCTCTTGTGGCCAGATCACCTGCATCCCCAAGGAGAGGGTGTCTCCAAAGTCACCTTGCAACAACAGCTC
AGCTGCAGAGGGTTTTGGTGAAGCCATGGCCTCTGACACAGGGTTCTCTCTCAACCTTTCAGAGCTGAGA
GAATATTCAGAAGGTCTCACAGAGCCCGGGGAAACCGAGGACAGGAACCACTGTTCTTCTCAGGCCGGCC
AGTCGGTTATCTCCTTGCTGAGTGCAGAAGAACTGGAAAAACTCATTGAGGAAGTGAGAGTTCTAGATGA
AGCAACATTGAAGCAATTAGACAGCATTCATGTCACCATCTTACACAAGGAAGAAGGTGCTGGTCTTGGA
TTCAGCTTGGCAGGAGGGGCAGATCTAGAAAACAAGGTGATCACGGTTCACAGAGTGTTTCCAAATGGGC
TGGCTTCCCAGGAAGGCACAATTCAGAAAGGCAACGAGGTTCTTTCCATCAATGGCAAATCTCTCAAGGG
CGCTACCCACAATGATGCCCTAGCTATCCTTCGCCAAGCTCGGGACCCAAGGCAAGCTGTGATTGTCACC
AGGAGGACAACTGTGGAGGCCACTCATGACCTGAACTCCTCTACTGACTCCGCAGCCTCAGCTTCAGCAG
CCAGTGACATTTCTGTAGAATCTAAGGAGGCCACTGTCTGCACAGTGACACTGGAGAAGACCTCTGCAGG
GCTGGGCTTCAGCCTGGAGGGAGGAAAGGGCTCCCTGCATGGTGACAAGCCTCTTACCATAAACAGGATT
TTCAAAGGGACAGAACAGGGTGAGATGGTGCAGCCAGGGGATGAGATCTTGCAGCTCGCTGGCACTGCTG
TGCAAGGTCTTACCCGGTTTGAAGCCTGGAATGTCATCAAGGCATTGCCTGATGGACCTGTCACTATAGT
CATCAGAAGGACCAGCCTCCAGTGCAAGCAGACAACAGCTTCTGCAGACTCATAG

Translation (624 aa):
MDYSFDITAEDPWVRISDCIKNLFSPIMSENHSHTPLQPNTSLGEEDGTQGCPEGGLSKMDAANGAPRVY
KSADGSTVKKGPPVAPKPAWFRQSLKGLRNRAPDPRRPPEVASAIQPTPVSRDPPGPQPQASSSIRQRIS
SFENFGSSQLPDRGVQRLSLQPSSGETTKFPGKQDGGRFSGLLGQGATVTAKHRQTEVESMSTTFPNSSE
VRDPGLPESPPPGQRPSTKALSPDPLLRLLTTQSEDTQGPGLKMPSQRARSFPLTRTQSCETKLLDEKAS
KLYSISSQLSSAVMKSLLCLPSSVSCGQITCIPKERVSPKSPCNNSSAAEGFGEAMASDTGFSLNLSELR
EYSEGLTEPGETEDRNHCSSQAGQSVISLLSAEELEKLIEEVRVLDEATLKQLDSIHVTILHKEEGAGLG
FSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHNDALAILRQARDPRQAVIVT
RRTTVEATHDLNSSTDSAASASAASDISVESKEATVCTVTLEKTSAGLGFSLEGGKGSLHGDKPLTINRI
FKGTEQGEMVQPGDEILQLAGTAVQGLTRFEAWNVIKALPDGPVTIVIRRTSLQCKQTTASADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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