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Report for CCDS89900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89900.1 Public Mus musculus 5 Gckr 23 108 98 CCDS HistoryNCBI Gene:231103Re-query CCDS DB by CCDS ID:89900.1Re-query CCDS DB by GeneID:231103See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201166.3 ENSMUSP00000144202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201166.3Link to Ensembl Protein Viewer:ENSMUSP00000144202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201166Re-query CCDS DB by Protein ID:ENSMUSP00000144202
Current member NCBI NM_001374741.1 NP_001361670.1 Accepted alive Link to Nucleotide Sequence:NM_001374741.1Link to Protein Sequence:NP_001361670.1Re-query CCDS DB by Nucleotide ID:NM_001374741Re-query CCDS DB by Protein ID:NP_001361670Link to BLAST:NP_001361670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001361670.1 623 Q91X44-2 623 100% 0 0

Chromosomal Locations for CCDS 89900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31297620 31297679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31298165 31298320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31298714 31298782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31299558 31299626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31299999 31300072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31300579 31300645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31300812 31300865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31302157 31302251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31304969 31305074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31306488 31306606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31307066 31307164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31307321 31307418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31307755 31307831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31308185 31308281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31308836 31308933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31309021 31309104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31324572 31324721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31326357 31326491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31326927 31327091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGCCAAGCACCAAGCGGTATCAGCATGTGATCGAGACCCCTGAGCCTGGGGAATGGGAGTTGTCAGGGT
ATGAAGCAGCTGTGCCAATCACAGAGAAGTCCAACCCACTGACCCGGAACTTGGACAAAGCAGATGCAGA
GAAAATTGTTCAACTGCTGGGGCAGTGTGATGCTGAGATATTCCAGGAGGAGGGGCAAATCATGCCCACC
TACCAGCGACTGTACAGTGAGTCAGTTCTGACCACCATGTTGCAAGTGGCTGGCAAGGTCCAGGAAGTGC
TGAAGGAGCCAGATGGGGGCCTGGTGGTGCTGAGTGGAGGGGGCACCTCTGGTCGTATGGCATTCCTTAT
GTCTGTGTCTTTCAACCAGCTGATGAAAGGTCTGGGACAAAAACCTCTTTACACATACCTCATTGCAGGG
GGTGACAGGTCTGTTGTAGCCTCTCGGGAACGGACAGAAGATAGCGCCCTACACGGAATCGAGGAGCTGA
AGAAGGTGGCTGCTGGGAAAAAGAGAGTGGTCGTTATAGGCATTTCCGTGGGACTCTCTGCGCCCTTTGT
GGCAGGCCAGATGGACTACTGCATGGATAACACAGCTGTCTTCTTGCCGGTCCTGGTTGGCTTCAATCCG
GTGAGCATGGCCAGAAATGATCCCATTGAAGACTGGAGATCGACATTCCGACAAGTGGCAGAGCGGATGC
AGAAGATGCAGGAGAAACAGGAAGCCTTTGTGCTCAATCCTGCCATCGGGCCTGAGGGGCTCAGTGGCTC
TTCCCGAATGAAAGGTGGAAGCGCCACCAAGATTCTACTGGAAACCCTGCTACTAGCAGCCCATAAGACT
GTGGACCAGGGTGTTGTGTCCTCTCAAAGATGCCTTCTGGAAATCCTGAGGACATTTGAGCGGGCTCATC
AGGTAACCTACAGTCAAAGTTCCAAAATTGCCACTCTGACGAAGCAAGTTGGCATCAGCCTGGAGAAAAA
AGGCCACGTGCACTTGGTTGGCTGGCAGACCCTCGGTATCATCGCCATTATGGATGGGGTAGAGTGTATC
CACACTTTTGGTGCTGATTTCCGAGATATCCGTGGCTTTCTTATTGGTGACCACAATGACATGTTTAACC
AGAAGGATGAGCTCAGCAATCAGGGTCCCCAGTTCACCTTCTCTCAGGATGACTTCCTGACTTCTGTTCT
GCCATCCCTTACGGAAATTGACACTGTGGTCTTCATTTTTACCCTGGATGATAACCTCGCAGAAGTACAG
GCCCTGGCAGAAAGGGTGAGGGAGAAGAGTTGGAACATCCAGGCCCTGGTGCACAGCACAGTGGGGCAGT
CCTTGCCAGCTCCTCTAAAGAAGCTCTTTCCCTCGCTCATCAGCATCACATGGCCACTTCTTTTCTTCGA
TTATGAAGGGAGCTACGTTCAGAAGTTCCAGCGTGAGTTAAGCACCAAGTGGGTGTTGAATACAGTGAGT
ACTGGGGCCCATGTGCTGCTGGGGAAGATCCTACAGAACCACATGCTGGACCTCCGCATCGCCAACTCCA
AACTCTTCTGGAGGGCACTGGCCATGTTGCAGAGGTTCTCAGGACAGTCCAAGGCTCGCTGCATTGAGAG
TCTTCTTCAAGTGATACATTTCCCTCAACCGCTGTCGAATGATGTCCGCGCGGCCCCCATCTCCTGCCAT
GTCCAGGTTGCCCACGAGAAGGAAAAGGTGATCCCCACAGCCTTGCTGAGTCTCCTACTCAGGTGCTCCA
TCACTGAGGCTAAGGAACGCCTGGCTGCAGCTTCTTCAGTCTGTGAGGTTGTTAGGAGCGCCCTCTCTGG
GCCAGGTCAGAAACGCAGCATCCAAGCCTTTGGAGACCCTGTGGTGCCCTGA

Translation (623 aa):
MPSTKRYQHVIETPEPGEWELSGYEAAVPITEKSNPLTRNLDKADAEKIVQLLGQCDAEIFQEEGQIMPT
YQRLYSESVLTTMLQVAGKVQEVLKEPDGGLVVLSGGGTSGRMAFLMSVSFNQLMKGLGQKPLYTYLIAG
GDRSVVASRERTEDSALHGIEELKKVAAGKKRVVVIGISVGLSAPFVAGQMDYCMDNTAVFLPVLVGFNP
VSMARNDPIEDWRSTFRQVAERMQKMQEKQEAFVLNPAIGPEGLSGSSRMKGGSATKILLETLLLAAHKT
VDQGVVSSQRCLLEILRTFERAHQVTYSQSSKIATLTKQVGISLEKKGHVHLVGWQTLGIIAIMDGVECI
HTFGADFRDIRGFLIGDHNDMFNQKDELSNQGPQFTFSQDDFLTSVLPSLTEIDTVVFIFTLDDNLAEVQ
ALAERVREKSWNIQALVHSTVGQSLPAPLKKLFPSLISITWPLLFFDYEGSYVQKFQRELSTKWVLNTVS
TGAHVLLGKILQNHMLDLRIANSKLFWRALAMLQRFSGQSKARCIESLLQVIHFPQPLSNDVRAAPISCH
VQVAHEKEKVIPTALLSLLLRCSITEAKERLAAASSVCEVVRSALSGPGQKRSIQAFGDPVVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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