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Report for CCDS89792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89792.1 Public Mus musculus 4 Tmem61 23 108 98 CCDS HistoryNCBI Gene:329909Re-query CCDS DB by CCDS ID:89792.1Re-query CCDS DB by GeneID:329909See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238833.1 ENSMUSP00000158903.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238833.1Link to Ensembl Protein Viewer:ENSMUSP00000158903.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238833Re-query CCDS DB by Protein ID:ENSMUSP00000158903
Original member Current member NCBI NM_001370848.1 NP_001357777.1 Accepted alive Link to Nucleotide Sequence:NM_001370848.1Link to Protein Sequence:NP_001357777.1Re-query CCDS DB by Nucleotide ID:NM_001370848Re-query CCDS DB by Protein ID:NP_001357777Link to BLAST:NP_001357777.1

Chromosomal Locations for CCDS 89792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106499015 106499243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106502741 106503090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106505647 106505661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGTTGCATGCCAGACATGCGCCAGAGGCCGGGTGGCCTCCACTGTGCGTTACTGCATGACGGTCGGTG
GCTCAGTGGTCCTGGTGGTTGGGACACTCTGCTTCGCGTCGTGGAGCGAAGGCAGTGTTGCCGTCCAGCC
TGGCTCGCTGCCCGCCACCGTGAAGCAGCCATCTCCCGAGATGCCCCCAACTTGGCTCAAGTCTGTCATC
ATCCTCTGCTGCATCGTGGGTGGTCTGCTTCTGTTCTTTGGCCTGCTTTGGTCCATCCAGGAAAGGACAA
AGAAGTCAAGCCAGGGGGACTTCTACCGACTCTCCAGAGACCTGTATCGCCTTGCTGTGGAGTGCCCTGT
GAAGGAGCCCTACAGGCCTCCTAAGGAGGCTGTCATTTCCACTTATGAGGAGACCATGCACTATCCACTG
GCTGAGGGTCTCCTGCAATTCCCTGTGCAGCCTGAAGAAGACCTCCAGTGCCATGCCCCAGGGGATGCCC
TGCTGGGGTCAGCATCCTTCTCACGCCCACCCAGCTACGAGAGCATCCTCCTCGCTCAGGGGCCTGTTTC
TGGATTGAGTGCTGCAGGCTCCAGCCCTGTCTGA

Translation (197 aa):
MVACQTCARGRVASTVRYCMTVGGSVVLVVGTLCFASWSEGSVAVQPGSLPATVKQPSPEMPPTWLKSVI
ILCCIVGGLLLFFGLLWSIQERTKKSSQGDFYRLSRDLYRLAVECPVKEPYRPPKEAVISTYEETMHYPL
AEGLLQFPVQPEEDLQCHAPGDALLGSASFSRPPSYESILLAQGPVSGLSAAGSSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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