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Report for CCDS89724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89724.1 Public Mus musculus 4 Rragd 23 108 98 CCDS HistoryNCBI Gene:52187Re-query CCDS DB by CCDS ID:89724.1Re-query CCDS DB by GeneID:52187See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89724.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029946.13 ENSMUSP00000029946.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029946.13Link to Ensembl Protein Viewer:ENSMUSP00000029946.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029946Re-query CCDS DB by Protein ID:ENSMUSP00000029946
Original member Current member NCBI NM_001369055.1 NP_001355984.1 Accepted alive Link to Nucleotide Sequence:NM_001369055.1Link to Protein Sequence:NP_001355984.1Re-query CCDS DB by Nucleotide ID:NM_001369055Re-query CCDS DB by Protein ID:NP_001355984Link to BLAST:NP_001355984.1

Chromosomal Locations for CCDS 89724.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 32983463 32983607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32995032 32995196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 32995802 32996097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33004151 33004350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33005134 33005248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33007070 33007212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33012904 33013052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33018647 33018798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGAGCCAAGTGCTGGGCAAGCCGCAGCCGCAGGGTGAGGACGGCGGCGAGGACGAGGAGGAGGATGAGC
TGGTGGGGCTGGCGGGCTACGAGGATGGGCCCGAGTCCTCGGACGCCGAGCTGGACAGCGGGCCGGAGGA
GGGAGAGTCTAGAAGAAACAGTTGGATGCCCAGGAGCTGGTGCAGTGAAGCCACCAGGCATGAGTGCTGG
GAACCAGGCCTCTGGAGGAGCAGCCACTTGCTGGGCATTGGTGGTGGATGGCGCATGCCTTTCATTCTAG
TGCTCAGGAGGCAGAGGCAGGCAGATTTCTTTCTGGACTTCAGCGACCCCTTCAGCACTGAGGTGAAGCC
CAGAATCCTGCTCATGGGTCTCAGGAGGAGCGGCAAGTCGTCTATCCAGAAAGTCGTCTTTCACAAAATG
TCCCCGAGCGAGACGCTGTTCTTGGAGAGCACCAACAGGATCTGCCGGGAAGACGTCTCCAACAGCTCCT
TCGTCAACTTCCAGATTTGGGACTTCCCAGGGCAGATTGACTTTTTTGACCCTACCTTTGACTATGAGAT
GATCTTCCGGGGAACCGGGGCACTGATCTTCGTCATCGACTCCCAGGATGACTATATGGAAGCGCTGGCC
CGGCTCCATCTCACAGTGACCAGGGCCTACAAGGTGAACACTGATATCAACTTTGAGGTGTTTATTCATA
AAGTAGATGGTCTGTCAGATGACCACAAAATTGAAACCCAGAGAGACATTCACCAGAGGGCAAACGATGA
CCTCGCTGATGCTGGATTAGAAAAAATTCACCTGAGCTTTTACCTGACAAGCATATATGATCATTCAATA
TTTGAAGCCTTTAGCAAAGTGGTTCAGAAACTGATCCCACAGCTCCCGACGCTGGAGAATCTGCTGAACA
TCTTTATCTCAAATTCTGGAATTGAGAAAGCGTTTCTGTTTGACGTGGTCAGTAAGATTTATATTGCAAC
CGACAGCACGCCGGTGGACATGCAGACGTACGAGCTCTGCTGTGACATGATTGACGTGGTGATCGACATC
TCTTGTATTTATGGTCTCAAAGAAGATGGAGCAGGAGCCCCGTATGACAAGGACTCAACAGCCATTATAA
AGCTGAATAATACAACAGTTCTTTATTTAAAAGAGGTCACAAAGTTCTTGGCGCTCGTTTGCTTCGTCAG
AGAGGAAAGCTTTGAAAGAAAAGGGCTGATTGACTATAATTTCCACTGCTTCCGGAAGGCCATCCATGAA
GTCTTCGAGGTGAGGATGAAGATGGTGAAATCTCGAAAGGCCCAGAGTCGGCTACCCAAGAAGACAGGAG
CTACTCCCAATGGGACCCCTAGAGTGCTGCTGTAG

Translation (454 aa):
MSQVLGKPQPQGEDGGEDEEEDELVGLAGYEDGPESSDAELDSGPEEGESRRNSWMPRSWCSEATRHECW
EPGLWRSSHLLGIGGGWRMPFILVLRRQRQADFFLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKM
SPSETLFLESTNRICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALA
RLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSI
FEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCCDMIDVVIDI
SCIYGLKEDGAGAPYDKDSTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERKGLIDYNFHCFRKAIHE
VFEVRMKMVKSRKAQSRLPKKTGATPNGTPRVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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