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Report for CCDS89701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89701.1 Public Mus musculus 3 Ttll7 23 108 98 CCDS HistoryNCBI Gene:70892Re-query CCDS DB by CCDS ID:89701.1Re-query CCDS DB by GeneID:70892See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106134.3 ENSMUSP00000101740.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106134.3Link to Ensembl Protein Viewer:ENSMUSP00000101740.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106134Re-query CCDS DB by Protein ID:ENSMUSP00000101740
Original member Current member NCBI NM_001357217.1 NP_001344146.1 Accepted alive Link to Nucleotide Sequence:NM_001357217.1Link to Protein Sequence:NP_001344146.1Re-query CCDS DB by Nucleotide ID:NM_001357217Re-query CCDS DB by Protein ID:NP_001344146Link to BLAST:NP_001344146.1

Chromosomal Locations for CCDS 89701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146894176 146894200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146894364 146894495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146896606 146896727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146897747 146897814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146901324 146901482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146904034 146904250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146909506 146909670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146913230 146913388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146915695 146915789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146930055 146930202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146930394 146930467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146931478 146931613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146934528 146934614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146939976 146940177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146944006 146944208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146945094 146945228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146947578 146947658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146961604 146961764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146967996 146968169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146979631 146979751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGCCATCTCTGCCTCAAGATGGGGTTATTCAGGGATCATCTCCTGTGGATCTGGGTACAGAATTACCTT
ACCAATGCACAATGAAAAGGAAAGTGAGAAAAAAGAAGAAGAAGGGAATTATTACAGCTAATGTTGCCGG
AACAAAGTTTGAAATTGTTCGTTTAGTAATAGATGAGATGGGATTTATGAAAACTCCTGATGAAGATGAG
ACAAGCAATCTTATCTGGTGTGATGCTGCTGTTCAGCAGGAGAAGATTACAGACCTGCAGAACTACCAGA
GAATCAACCATTTTCCAGGAATGGGAGAGATCTGTAGGAAGGATTTCTTAGCAAGAAATATGACGAAAAT
GATCAAGTCTCGGCCTATGGATTATACCTTTGTTCCGAGAACGTGGATTTTCCCTTCTGAATATACTCAG
TTCCAAAACTATGTGAAAGAATTGAAGAAAAAACGGAAGCAGAAAACTTTTATAGTAAAACCAGCTAATG
GTGCAATGGGTCATGGGATTTCATTGATAAGAAATGGGGATAAAGTCCCTTCTCAGGATCATTTGATAGT
TCAAGAATACATTGAGAAACCTTTCCTAATGGAAGGCTACAAGTTTGACTTACGGATTTATATTTTGGTT
ACATCCTGTGATCCATTAAAGATATTTCTCTACCATGATGGGCTTGTGCGCATGGGCACTGAGAAGTACA
TCCCACCAAACGAGTCCAACTTGACCCAGTTATACATGCATCTGACCAACTACTCAGTGAACAAACACAA
TGAACGGTTTGAGCGCAATGAAACTGAAGACAAAGGCAGCAAGCGGTCAATCAAGTGGTTTACGGAATTC
CTACAGGCCAATCAACATGATGTCACTAAGTTCTGGAGTGATATTTCAGAGTTGGTGGTAAAGACTCTGA
TTGTGGCAGAACCTCACGTCCTGCACGCCTACCGGATGTGCAGACCCGGTCAGCCCCCCGGGAGCGAAAG
TGTCTGCTTCGAAGTCCTGGGGTTCGACATCTTGTTGGATAGAAAGCTCAAGCCATGGCTTCTGGAGATT
AATCGAGCCCCAAGCTTTGGAACTGATCAGAAAATCGATTATGATGTTAAAAGGGGGGTTCTGCTAAACG
CGCTGAAGCTGCTGAACATCAGGACCAGCGATAAAAGGAAAAACTTGGCCAAGCAAAAAGCGGAGGCTCA
GAGGAGGCTGTACGGTCAAAACCCAGTAAGAAGGCTTTCGCCAGGCTCCTCCGACTGGGAACAGCAGAGG
CACCAGCTGGAGAGGCGGAAAGAAGAGTTGAAAGAGAGACTCCTTCAAGTACGAAAGCAGGTTTCGCAGG
AAGAACATGAAAACCGACATATGGGGAATTACAGGAGAATTTATCCTCCTGAAGACAAAGCACTGCTTGA
GAAGTATGAAGGTTTGCTGGCCGTCGCCTTCCAGACCTTCCTCTCGGGAAGAGCAGCTTCATTCCAGCGA
GAAATGAACAATCCTCTGAAAAAGATGCGGGAGGAAGATCTCCTGGATCTTCTGGAGCAGTGCGAAATCG
ATGATGAAAAGCTGATGGGGAAAACCGGCCGGGTCCGAGGACCGAAGCCCCTGTGCTGCATGCCAGAGTG
TGCAGAGGTCACGAAGAAGCAGAAGTATTACGGTAGCAGTGACAGCAGCTACGACAGCAGCAGCAGCAGC
AGCAATTCAGAGCTGGATGAGAACGAAAAAGAGCTGTGTCAGAAGAGACTAGACCAAGTCCCATATAGCC
TTAAGCACACCAGTCACTGCAAGATAATCCAGCAATCCAATTCCATGAGGCGTTCGGTCAGCTGCCCTCG
GTCCATCTCTGCTCACTTACCTTCCAGAGGGGATGTGCGCCCCTTTTCTTCTCAACAAGTGATACCATTA
GCAAGACCAACGTCAGCGTCCCGGTCACATTCCTTAAACCGCGCTTCATCCTACGCGAGACACCTGCCTC
ACGGCAGTGACACCGGCTCTACCAACACTCTGAACGAGTCTTTGCGGCAATTGAAAACCAAAGAGCAGGA
AGACGACCTCACCAGTCAGACCTTGTTTGTCCTCAAGGACATGAGAATCCGCTTTCCGGGGAAGTCAGAC
GCAGAGTCGGAGCTCCTGATAGAAGATATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCAT
ATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAAGTTTTGGACATAGTAAAATCAAGTATTCGTAC
AGTTCTTCCAAGAATCTGGAGGGTCCCTGATGCTGAAGAACTGAGTTTATACCGGATTTTCAACAGGGTA
TTTAATCGCCTACTCTGGAGTCATGGCCAAGGACTGTGGAGCTGTTTCTGTGATTCAGGATCCTCTTGGG
AGAGCATCTTCAGTAAGAGCCCTGAGGTGGTGACCCCTCTGCAGCTCCAGTGCTGCCAGCGCCTGGTGGA
GCTTTGCAAGCAGTGCCTGCTGGTGGTTTACAAATACACAACAGAAACAAGAGGACCCATCTCAGGCATC
GGTCCTGACTGGGGGAACTCCAGGTATTTGCTACCAGGAAGTACCCAATTTCTTATGAGATCACCACTGT
ACAACATGAAATATAATTCACCCGGAATGACTCGCTCCAATGTTTTGTTTACGTCCCGCTATGGCCGTTT
GTGA

Translation (887 aa):
MPSLPQDGVIQGSSPVDLGTELPYQCTMKRKVRKKKKKGIITANVAGTKFEIVRLVIDEMGFMKTPDEDE
TSNLIWCDAAVQQEKITDLQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPMDYTFVPRTWIFPSEYTQ
FQNYVKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKVPSQDHLIVQEYIEKPFLMEGYKFDLRIYILV
TSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNERFERNETEDKGSKRSIKWFTEF
LQANQHDVTKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEI
NRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKRKNLAKQKAEAQRRLYGQNPVRRLSPGSSDWEQQR
HQLERRKEELKERLLQVRKQVSQEEHENRHMGNYRRIYPPEDKALLEKYEGLLAVAFQTFLSGRAASFQR
EMNNPLKKMREEDLLDLLEQCEIDDEKLMGKTGRVRGPKPLCCMPECAEVTKKQKYYGSSDSSYDSSSSS
SNSELDENEKELCQKRLDQVPYSLKHTSHCKIIQQSNSMRRSVSCPRSISAHLPSRGDVRPFSSQQVIPL
ARPTSASRSHSLNRASSYARHLPHGSDTGSTNTLNESLRQLKTKEQEDDLTSQTLFVLKDMRIRFPGKSD
AESELLIEDIMDNWKHYKTKVASYWLIKLDSVKQRKVLDIVKSSIRTVLPRIWRVPDAEELSLYRIFNRV
FNRLLWSHGQGLWSCFCDSGSSWESIFSKSPEVVTPLQLQCCQRLVELCKQCLLVVYKYTTETRGPISGI
GPDWGNSRYLLPGSTQFLMRSPLYNMKYNSPGMTRSNVLFTSRYGRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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