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Report for CCDS89425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89425.1 Public Mus musculus 2 Sec61a2 23 108 98 CCDS HistoryNCBI Gene:57743Re-query CCDS DB by CCDS ID:89425.1Re-query CCDS DB by GeneID:57743See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193792.5 ENSMUSP00000141333.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193792.5Link to Ensembl Protein Viewer:ENSMUSP00000141333.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193792Re-query CCDS DB by Protein ID:ENSMUSP00000141333
Original member NCBI NM_001356411.1 NP_001343340.1 Updated not alive Link to Nucleotide Sequence:NM_001356411.1Link to Protein Sequence:NP_001343340.1Re-query CCDS DB by Nucleotide ID:NM_001356411Re-query CCDS DB by Protein ID:NP_001343340
Current member NCBI NM_001356411.2 NP_001343340.1 Accepted alive Link to Nucleotide Sequence:NM_001356411.2Link to Protein Sequence:NP_001343340.1Re-query CCDS DB by Nucleotide ID:NM_001356411Re-query CCDS DB by Protein ID:NP_001343340Link to BLAST:NP_001343340.1

Chromosomal Locations for CCDS 89425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5871835 5872021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5873743 5873819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5874227 5874418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5876841 5877001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5877855 5878008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5882581 5882690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5882818 5882949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5886499 5886577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5891290 5891355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5893154 5893221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5895257 5895263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGGCATCAAGTTTTTAGAAGTTATTAAACCTTTCTGTGCAGTTCTACCAGAAATTCAGAAGCCTGAAA
GGAAAATTCAGTTTAGAGAGAAGGTACTATGGACTGCTATAACACTCTTCATTTTCTTAGTATGCTGTCA
GATTCCGCTGTTTGGGATCATGTCATCGGACTCTGCAGATCCCTTCTACTGGATGAGAGTTATTCTTGCA
TCCAACAGAGGAACATTGATGGAATTGGGTATTTCCCCAATTGTAACGTCTGGTTTGATTATGCAGTTGT
TAGCTGGAGCCAAAATCATTGAAGTTGGAGACACACCCAAAGATAGAGCTCTGTTCAATGGAGCCCAGAA
ATTATTTGGTATGATCATTACCATTGGGCAAGCCATTGTGTATGTCATGACGGGGATGTACGGGGACCCT
GCGGAAATGGGTGCTGGGATCTGTCTCCTTATCATTATTCAGTTGTTTGTTGCTGGTTTGATTGTGCTGC
TGTTAGATGAGCTGCTACAGAAGGGTTACGGCTTGGGGTCTGGGATTTCCCTCTTTATTGCCACCAACAT
CTGTGAAACCATTGTCTGGAAGGCCTTTAGTCCCACTACCATTAACACTGGCAGAGGTACGGAGTTTGAA
GGTGCAGTCATAGCTCTGTTTCATTTGCTGGCCACCAGGACAGACAAGGTGCGAGCCTTGAGGGAGGCTT
TCTATAGGCAGAACCTCCCCAACCTCATGAACCTCATCGCCACAGTGTTCGTGTTTGCTGTCGTCATCTA
TTTTCAGGATGTCAGTGGGGGAGGGCCTGCTCGCTCCTACCCTGTTGGCGGCCTTTGTTACTATCTGTCT
CCTCCTGAGTCTATGGGAGCCATATTTGAGGATCCTGTTCATGTAGTTGTATATATTATCTTCATGTTGG
GGTCATGTGCATTCTTTTCTAAGACGTGGATAGAAGTTTCTGGTTCTTCAGCCAAAGATGTGGCCAAGCA
ACTTAAAGAACAGCAGATGGTGATGAGGGGTCACAGAGATACCTCCATGGTCCATGAGCTGAACAGGTAC
ATCCCCACAGCAGCTGCCTTTGGGGGTCTGTGCATCGGTGCCCTGTCAGTACTAGCAGACTTCCTTGGGG
CCATTGGCTCTGGTACTGGAATTCTGCTTGCAGTCACTATTATTTATCAGTATTTTGAAATATTTGTTAA
GGAACAGGCTGAAGTTGGTGGAATGGGTGCTTTGTTTTTCTAA

Translation (410 aa):
MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILA
SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDP
AEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFE
GAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQDVSGGGPARSYPVGGLCYYLS
PPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRY
IPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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