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Report for CCDS88907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88907.1 Public Mus musculus 16 Gmnc 23 108 98 CCDS HistoryNCBI Gene:239789Re-query CCDS DB by CCDS ID:88907.1Re-query CCDS DB by GeneID:239789See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231299.1 ENSMUSP00000156264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231299.1Link to Ensembl Protein Viewer:ENSMUSP00000156264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231299Re-query CCDS DB by Protein ID:ENSMUSP00000156264
Original member Current member NCBI NM_001285918.1 NP_001272847.1 Accepted alive Link to Nucleotide Sequence:NM_001285918.1Link to Protein Sequence:NP_001272847.1Re-query CCDS DB by Nucleotide ID:NM_001285918Re-query CCDS DB by Protein ID:NP_001272847Link to BLAST:NP_001272847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272847.1 291 Q3URY2-3 291 100% 0 0

Chromosomal Locations for CCDS 88907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 26960254 26960871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26962894 26963010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26963884 26963972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 26989909 26989960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGAGAATCACGGACTGGGCAACAAGAGGCTATGGAAGATGCTGTGTTCCAGAATCGCCCTCTGAGTTAA
GTTTCCCTGTTCTGGACTCATGTTCATGGGAAGAGGCTCAGCTCTCATCTCAGCTCTACAGAAATAAACA
GCTCCAGGATACTCTACTGCAGAAGGAGGAAGAACTTGCTAGGCTACATGAAGAGAATAATCACCTCAGA
CAATACCTGAATTCTACTTTGGTTAAACGTCTGGAAGAGAAGGCCAAGAAGTTGCTGTCATCAGATGAGT
TTTCCAAAGTGTTTGGAAAACTCAGAAAAGAGAAGAGGAAACCCAAAGAACACAGACACTCCCCTGCTGA
GATTCCCCAGTTCAAAACTGCCAAGAGAAACCTCTCCACAGAGTTTTCTAACTGTGAGGAACAACCTGGG
CCCCATGTGGACCCCTGGGTTCTTCAAACCCTTGGGTTAAAAGACCTCAACACCATTGATGACACTCTAC
CAGCTAACTACAGTGCCACCACCTCTCATCCCAGAGCAGTTCCCAGTATTTCCTCTCTGTTTGTACATGA
TGCAAATGGCTATGCAAATGTCCCCAGAGATCTACACCTCGACTATGTAGGTCAGGGAACACATGGCTCA
CATACCACCTCCATCCACCAGGAAGATTGTCACAGTTTTCCTAGGCTTTCTAATCCTCCAGTGAGGGTGC
AGACTCTTCCTTACCACACTGCAGATGTGTCACCCAACAAGACAGAGATGGCCTTTTCCACATCTTTGAG
CCCTCACTGTAATGTGAAAACTCACTCCTTCCACCAGGGACAAGCCTTTGTGCGTCGAGATGAGGAAGGA
GGTTGGAAGTTTACCTGGGTCCCTAAGCAGACCTAG

Translation (291 aa):
MRITDWATRGYGRCCVPESPSELSFPVLDSCSWEEAQLSSQLYRNKQLQDTLLQKEEELARLHEENNHLR
QYLNSTLVKRLEEKAKKLLSSDEFSKVFGKLRKEKRKPKEHRHSPAEIPQFKTAKRNLSTEFSNCEEQPG
PHVDPWVLQTLGLKDLNTIDDTLPANYSATTSHPRAVPSISSLFVHDANGYANVPRDLHLDYVGQGTHGS
HTTSIHQEDCHSFPRLSNPPVRVQTLPYHTADVSPNKTEMAFSTSLSPHCNVKTHSFHQGQAFVRRDEEG
GWKFTWVPKQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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