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Report for CCDS88650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88650.1 Public Mus musculus 14 Ttc5 23 108 98 CCDS HistoryNCBI Gene:219022Re-query CCDS DB by CCDS ID:88650.1Re-query CCDS DB by GeneID:219022See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226768.1 ENSMUSP00000154412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226768.1Link to Ensembl Protein Viewer:ENSMUSP00000154412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226768Re-query CCDS DB by Protein ID:ENSMUSP00000154412
Original member Current member NCBI NM_177625.4 NP_808293.1 Accepted alive Link to Nucleotide Sequence:NM_177625.4Link to Protein Sequence:NP_808293.1Re-query CCDS DB by Nucleotide ID:NM_177625Re-query CCDS DB by Protein ID:NP_808293Link to BLAST:NP_808293.1

Chromosomal Locations for CCDS 88650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50777251 50777412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50777757 50777968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50781475 50781607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50785438 50785488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGATGGCTGATGAAGAGGAAGAAGCGAAGCACGTCTTGCAGAAATTGCAGGGACTGGTGGATCGGCTCT
ACTGTTTTCGAGACAGTTACTTTGAGACACATAGTGTCGAAGATGCAGGACGGAAGCAGCAGGATGTACA
GGAAGAGATGGAGAAGACCCTGCAGCAGATGGAGGAAGTACTCGGTTCTGCCCAGGTTGAGGCACAGGCT
CTGATGCTGAAGGGGAAGGCACTGAATGTGACTCCTGATTATAGCCCTGAGGCCGAGGTGCTTCTCTCCA
AGGCCGTGAAGCTGGAGCCTGAGCTGGTGGAAGCCTGGAACCAGCTGGGTGAGGTGTACTGGAAGAAAGG
AGATGTCGCGTCTGCCCACACCTGCTTCTCAGGAGCCCTCACCCACTGCAAGAACAAAGTCTCTCTGCAG
AACTTGTCCATGGTGCTCCGCCAGCTGCAGACCGACTCTGGAGATGAACATTCTCGCCACGTCATGGACA
GCGTCCGGCAGGCTAAGTTGGCCGTGCAGATGGATGTCCTTGATGGCCGCTCCTGGTGTGAGTGTTAG

Translation (185 aa):
MMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQA
LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVASAHTCFSGALTHCKNKVSLQ
NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWCEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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