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Report for CCDS88320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88320.1 Public Mus musculus 12 Colec11 23 108 98 CCDS HistoryNCBI Gene:71693Re-query CCDS DB by CCDS ID:88320.1Re-query CCDS DB by GeneID:71693See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220836.1 ENSMUSP00000152876.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220836.1Link to Ensembl Protein Viewer:ENSMUSP00000152876.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220836Re-query CCDS DB by Protein ID:ENSMUSP00000152876
Original member NCBI NM_001313978.1 NP_001300907.1 Updated not alive Link to Nucleotide Sequence:NM_001313978.1Link to Protein Sequence:NP_001300907.1Re-query CCDS DB by Nucleotide ID:NM_001313978Re-query CCDS DB by Protein ID:NP_001300907
Current member NCBI NM_001313978.2 NP_001300907.1 Accepted alive Link to Nucleotide Sequence:NM_001313978.2Link to Protein Sequence:NP_001300907.1Re-query CCDS DB by Nucleotide ID:NM_001313978Re-query CCDS DB by Protein ID:NP_001300907Link to BLAST:NP_001300907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300907.1 278 Q3SXB8-2 278 99.6403% 0 1

Chromosomal Locations for CCDS 88320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 28594657 28595066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28595244 28595339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28595960 28596013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28599044 28599115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28612863 28612934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 28617406 28617538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGATGATGAGGGACCTGGCTCTTGCAGGCATGCTGATTAGCCTGGCTTTCCTGTCCCTGCTGCCATCTG
GATGTCCTCAGCAGACCACAGAGGACGCCTGCTCTGTGCAGATTCTTGTCCCTGGCCTCAAAGGGGATGC
AGGAGAAAAGGGAGACAAAGGAGCCCCAGGACGGCCAGGAAGAGTCGGCCCTACAGGAGAAAAAGGAGAC
ATGGGGGACAAAGGACAGAAAGGCACTGTGGGCCGCCATGGAAAAATTGGTCCCATTGGCGCAAAAGGTG
AAAAAGGAGATTCTGGTGATATCGGACCCCCTGGCCCCAGTGGAGAACCTGGTATTCCATGTGAGTGCAG
TCAGCTGAGGAAGGCTATTGGGGAGATGGACAACCAGGTCACTCAACTGACAACTGAGCTAAAATTCATA
AAAAATGCACTGCCCTCCCCTGCAGCTGTTGCTGGCGTGCGCGAGACTGAGAGCAAGATCTACCTGCTGG
TGAAGGAGGAGAAGCGGTACGCAGATGCCCAGCTGTCCTGCCAAGCCCGAGGCGGCACACTGAGCATGCC
CAAAGACGAGGCAGCCAATGGCCTGATGGCTTCATACCTGGCACAGGCTGGCCTGGCCCGAGTCTTCATC
GGTATCAATGACCTGGAGAAAGAAGGTGCTTTCGTGTACTCGGACCGCTCCCCCATGCAGACCTTCAACA
AGTGGCGCAGTGGAGAGCCCAACAACGCCTATGATGAGGAGGACTGTGTGGAGATGGTGGCCTCAGGTGG
CTGGAATGATGTGGCCTGCCACATTACCATGTACTTCATGTGCGAGTTTGACAAAGAGAACTTGTGA

Translation (278 aa):
MMMRDLALAGMLISLAFLSLLPSGCPQQTTEDACSVQILVPGLKGDAGEKGDKGAPGRPGRVGPTGEKGD
MGDKGQKGTVGRHGKIGPIGAKGEKGDSGDIGPPGPSGEPGIPCECSQLRKAIGEMDNQVTQLTTELKFI
KNALPSPAAVAGVRETESKIYLLVKEEKRYADAQLSCQARGGTLSMPKDEAANGLMASYLAQAGLARVFI
GINDLEKEGAFVYSDRSPMQTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHITMYFMCEFDKENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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