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Report for CCDS88066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88066.1 Public Mus musculus 10 Ttc41 23 108 98 CCDS HistoryNCBI Gene:103220Re-query CCDS DB by CCDS ID:88066.1Re-query CCDS DB by GeneID:103220See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219108.1 ENSMUSP00000151920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219108.1Link to Ensembl Protein Viewer:ENSMUSP00000151920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219108Re-query CCDS DB by Protein ID:ENSMUSP00000151920
Original member Current member NCBI NM_153595.3 NP_705823.3 Accepted alive Link to Nucleotide Sequence:NM_153595.3Link to Protein Sequence:NP_705823.3Re-query CCDS DB by Nucleotide ID:NM_153595Re-query CCDS DB by Protein ID:NP_705823Link to BLAST:NP_705823.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705823.3 600 Q692V3-2 600 99.6667% 0 2

Chromosomal Locations for CCDS 88066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86712944 86713739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86719478 86719664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86724198 86724412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86729782 86729942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86730831 86731274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGAGCGACGAGGCAAGTGAGACCGGACAAAGATACAACGGTCAACCCATTTTAAAGCGCCAGAAACCCA
TCCTACCTTACATATGTTCCACTCTAGATTTTCAAGAAGAGAGAGACTTTTTGGCCAAAAGCATCTTCCC
TCGGCTTAATGACATCTGCAGCTCCCGGGGCACCTACTTCAAAGCTGTGGACTTGAGATGGTCAGCTGTG
AAGGCCCATAAGTCCTTCACCAGCAACCAGTTCCGACAGTACTCCTGTCTCCAGTCTCAACACCTGAAAC
TCTCCCTGGACTACGTGAACAGATGCTTCCCGTTTTTCATCGGCCTGCTGGGGCAGACCTACGGAGATTT
CCTCCCCGACTACACACCTTTCCTGTTATCCCAAGTGAAGGACTTCGAAAGTTTATCCAAGGGAGAACAG
AATCTATACATTGCTGCCAAAAATGGTTACCCTTGGGTTCTCAAGACTCCCAACTGCAGCCTGACAGAGT
TCGAGATCATCCAAGCAGTATTCCGGAAGAAATCTCAATTTCAATTTTTCTACTTCCGGACATCAAATTC
GCTGCTGCGAACTTTTAATGAGGAAGAGGAGGAGGAAGAGGAGAAGCTGTCCTCAGCATATCTGTTGAAC
GAACAGGGGAAGATGAAGGTTGGAAAGCTCAAGGCTAAGATCATTGGCAAAGGGCTTCCTGTCAGATTCT
ACAGAGACCTGGAGGAACTGGGGGATATGGTTTGGAAGGACTGGTCGGCTGTTGTGGAAAAGCTCTATCC
ATTCACTACGATCATGGGAAATATAGACTACAAACACAGTTTCGAGAATTTGTATCATGAAGAGTTTGTG
GAGAACTGCAAGCAAGTTTTTGTTACTTCCAAGGAGTCAAACAGAACCTTTGAAATATTGGAAAGATTTG
CTATAAAAGATCTTGATCTTGATCTTGATACTGACAGTACTATAGCAGGTTCGGGGTTAGACTCCATTCT
CAGAATCAATTCCCTTCCAACTTGTAAGTCCATTTTGCTCTTGTCTGGGGAACGCGGCTGTGGGAAGTCC
ACACTGATTGCCAACTGGGTCAGTAATTTCCAAAGCAAACACCCCGGAGTGCTGATGATCCCATACTTTG
TGGGCAGTACGTGTGAGAGCTGTGACATCATGTCTGTGATCCACTACTTCGTCATGGAGCTTCAGCACAG
AGCCAACGGTCCCCGGCTTGAAATGGATTTCCTTAACGAGGACTCAAATGTCTTGGTCTTTTCACTTCTC
GTAGAAGTGTTCATAGCCGCCATAAGCTTAAAGCCATGCATCCTGGTACTAGACGGGATCGAAGAGCTGA
TCGGTATCTATGGGATTTCAGGTCAGAAGGCGAAAGATTTCTCCTGGCTGCCGCGCTCCCTGCCTCCTCA
CTGTAAATTCATTCTGAGCAGCGTCTCCTCCAGTCTGTCCTGCAAGTCGCTGTGTGCCCGCCCTGACGTG
AAGATCGTGGAACTCAACAGCATCGGGGACGAAGACACCAAGTTCAACATCTTCAGACAGCACCTCTCCC
CTGCCGACCAAGAACGCTTCGGGCAGAGCAAGCCCATTTTGAGGAAGAAACCAAACCTGAGCCCTCTGAA
GCTCGCAATCATCGCCAGCGAGCTGCAGGAGTGCAAAATCTACCGCAATGAGTTCCAGTGTCTCCGGGAG
TACTTGGAGGTTGCCTCTGTGCAGGAGCTCTGGGAGTTGATTCTGAAGCGCTGGGTTGAAGATTATAGTT
GGACTTTGAAGCCTAAAGACACAACTCTAGACACCGTGATTCCAGGTGTGTGA

Translation (600 aa):
MSDEASETGQRYNGQPILKRQKPILPYICSTLDFQEERDFLAKSIFPRLNDICSSRGTYFKAVDLRWSAV
KAHKSFTSNQFRQYSCLQSQHLKLSLDYVNRCFPFFIGLLGQTYGDFLPDYTPFLLSQVKDFESLSKGEQ
NLYIAAKNGYPWVLKTPNCSLTEFEIIQAVFRKKSQFQFFYFRTSNSLLRTFNEEEEEEEEKLSSAYLLN
EQGKMKVGKLKAKIIGKGLPVRFYRDLEELGDMVWKDWSAVVEKLYPFTTIMGNIDYKHSFENLYHEEFV
ENCKQVFVTSKESNRTFEILERFAIKDLDLDLDTDSTIAGSGLDSILRINSLPTCKSILLLSGERGCGKS
TLIANWVSNFQSKHPGVLMIPYFVGSTCESCDIMSVIHYFVMELQHRANGPRLEMDFLNEDSNVLVFSLL
VEVFIAAISLKPCILVLDGIEELIGIYGISGQKAKDFSWLPRSLPPHCKFILSSVSSSLSCKSLCARPDV
KIVELNSIGDEDTKFNIFRQHLSPADQERFGQSKPILRKKPNLSPLKLAIIASELQECKIYRNEFQCLRE
YLEVASVQELWELILKRWVEDYSWTLKPKDTTLDTVIPGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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