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Report for CCDS88051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88051.1 Public Mus musculus 10 Cfd 23 108 98 CCDS HistoryNCBI Gene:11537Re-query CCDS DB by CCDS ID:88051.1Re-query CCDS DB by GeneID:11537See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217837.1 ENSMUSP00000151894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217837.1Link to Ensembl Protein Viewer:ENSMUSP00000151894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217837Re-query CCDS DB by Protein ID:ENSMUSP00000151894
Original member Current member NCBI NM_001291915.2 NP_001278844.1 Accepted alive Link to Nucleotide Sequence:NM_001291915.2Link to Protein Sequence:NP_001278844.1Re-query CCDS DB by Nucleotide ID:NM_001291915Re-query CCDS DB by Protein ID:NP_001278844Link to BLAST:NP_001278844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278844.1 258 P03953-2 258 100% 0 0

Chromosomal Locations for CCDS 88051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79890926 79890980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891459 79891612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891703 79891850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79891992 79892249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79892425 79892586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTGCACAGCCCCGAGGCC
GG
ATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCAC
A
CACGTGTGCGGTGGCACCCTGCTGGACGAGCAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGAGTG
ACG
GATGACGACTCTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCGCCCCTGAACCCTACAAGCGAT
GG
TATGATGTGCAGAGTGTAGTGCCTCACCCGGGCAGCCGACCTGACAGCCTTGAGGACGACCTCATTCT
T
TTTAAGCTATCCCAGAATGCCTCGTTGGGTCCCCACGTGAGACCCCTACCCTTGCAATACGAGGACAAA
GAA
GTGGAACCCGGCACGCTCTGCGACGTGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGCCTG
AT
GTCCTGCATCAACTCAGAGTGTCAATCATGAACCGGACAACCTGCAATCTGCGCACGTACCATGACGG
G
GTAGTCACCATTAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGGGGAGACTCCGGCAGC
CCT
CTAGTGTGCGGGGATGCAGTCGAAGGTGTGGTTACGTGGGGCTCTCGCGTCTGTGGCAATGGCAAAA
AG
CCGGGCGTCTATACCCGAGTGTCATCCTACCGGATGTGGATCGAAAACATCACAAATGGTAACATGAC
A
TCCTGA


Translation (258 aa):
MHSSVYFVALVILGAAVCAQPRGRILGGQEAAAHARPYMASVQVNGTHVCGGTLLDEQWVLSAAHCMDGV
T
DDDSVQVLLGAHSLSAPEPYKRWYDVQSVVPHPGSRPDSLEDDLILFK
LSQNASLGPHVRPLPLQYEDK
E
VEPGTLCDVAGWGVVTHAGRRPDVLHQLRVSIMNRTTCNLRTYHDGVVTINMMCAESNRRDTCR
GDSGS
P
LVCGDAVEGVVTWGSRVCGNGKKPGVYTRVSSYRMWIENITNGNMTS




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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