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Report for CCDS88045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88045.1 Public Mus musculus 10 Or10b1 23 108 98 CCDS HistoryNCBI Gene:258224Re-query CCDS DB by CCDS ID:88045.1Re-query CCDS DB by GeneID:258224See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204477.4 ENSMUSP00000154751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204477.4Link to Ensembl Protein Viewer:ENSMUSP00000154751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204477Re-query CCDS DB by Protein ID:ENSMUSP00000154751
Original member Current member NCBI NM_001370810.1 NP_001357739.1 Accepted alive Link to Nucleotide Sequence:NM_001370810.1Link to Protein Sequence:NP_001357739.1Re-query CCDS DB by Nucleotide ID:NM_001370810Re-query CCDS DB by Protein ID:NP_001357739Link to BLAST:NP_001357739.1

Chromosomal Locations for CCDS 88045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78517535 78517537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78519613 78520566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGCGCCTGAGAAGCAGCAGGACAATGGGACCTGGCTGGTGACAGAGTTCCTGCTGGTGGGATTCTCCA
ACCTCCCAGAACTGAGGCCCACTCTCTTCATCTTGTTCCTCCTCACCTACCTGGTCACACTCAGTGGCAA
TGCCACCATCATCACCATCATCCAGGTGGATCGCACTCTCCACACACCTATGTACCGCTTCCTGGCCGTG
CTCTCCCTCTCTGAGACCTGCTACACACTGGTCACCATCCCCAATATGCTGGCTCATCTGCTGATGGAGA
GCCAGGCCATCTCCATCGCGGGCTGTCGGGCCCAGATGTTCTTCTTCCTAGGCTTGGGTTGCAGCCATTG
TTTCCTCCTTACCCTGATGGGCTATGACAGGTATGTGGCCATCTGCCATCCCTTGCGCTACTCTGTGATC
ATGAGACCCACCGTCTGCCTGTGTTTGGGAGCCTTGGTTTTCTGCTCTGGTTTCTCAGTGGCCTTGATTG
AGACCTGCATGATCTTCTCCTCACCCTTCTGTGGCGCAGGCCATGTGGAGCACTTCTTCTGTGACATTGC
GCCTGTGCTGAAGCTCAGCTGTGATGAGAGCTCACTCAAGGGACTTGGCATCTTCTTCCTGAGCATCCTC
GTGGTGCTGGTCTCCTTCCTCTTCATTCTCCTCTCCTACGCCTTCATTGTGGCTGCCATTGTGAGGATCC
CTTCGGCCTCTGGCCGGCGCAAAGCCTTCTCTACCTGCGCAGCCCACCTCACGGTGGTCATCGTACATTT
TGGTTGTGCCTCCATCATCTACCTGAGGCCGGACTCTGGGGCTAATCCCTCCCAGGACCGCCTGGTGGCG
GTGTTCTACACCGTGGTGACACCGCTGCTGAACCCTGTGGTTTACACCCTGAGGAACAAGGAGGTGAGGG
TAGCGCTGAGGAAAAACCTGGCACGGGGCTGTGGAGCATTTAAGTAA

Translation (318 aa):
MAPEKQQDNGTWLVTEFLLVGFSNLPELRPTLFILFLLTYLVTLSGNATIITIIQVDRTLHTPMYRFLAV
LSLSETCYTLVTIPNMLAHLLMESQAISIAGCRAQMFFFLGLGCSHCFLLTLMGYDRYVAICHPLRYSVI
MRPTVCLCLGALVFCSGFSVALIETCMIFSSPFCGAGHVEHFFCDIAPVLKLSCDESSLKGLGIFFLSIL
VVLVSFLFILLSYAFIVAAIVRIPSASGRRKAFSTCAAHLTVVIVHFGCASIIYLRPDSGANPSQDRLVA
VFYTVVTPLLNPVVYTLRNKEVRVALRKNLARGCGAFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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