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Report for CCDS87913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87913.1 Public Mus musculus 1 Ildr2 23 108 98 CCDS HistoryNCBI Gene:100039795Re-query CCDS DB by CCDS ID:87913.1Re-query CCDS DB by GeneID:100039795See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194964.5 ENSMUSP00000142152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194964.5Link to Ensembl Protein Viewer:ENSMUSP00000142152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194964Re-query CCDS DB by Protein ID:ENSMUSP00000142152
Original member Current member NCBI NM_001357428.1 NP_001344357.1 Accepted alive Link to Nucleotide Sequence:NM_001357428.1Link to Protein Sequence:NP_001344357.1Re-query CCDS DB by Nucleotide ID:NM_001357428Re-query CCDS DB by Protein ID:NP_001344357Link to BLAST:NP_001344357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344357.1 602 B5TVM2-2 602 100% 0 0

Chromosomal Locations for CCDS 87913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166254376 166254466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166269305 166269637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166270499 166270618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166291416 166291472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166294591 166294737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166303502 166303615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166307720 166307933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166308847 166309543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166310760 166310795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGCCCGCTTTTCCCACTCTGGATCTGGATGGGAAGTTGGGGAAGATGGATAGGGTCGTGTTGGGGTGGA
CCGCTGTCTTCTGGTTAACAGCCATGGTTGAAGGCCTTCAGGTCACAGTGCCTGACAAGAAGAAGGTGGC
CATGCTCTTCCAGCCCACTGTGCTTCGATGCCACTTTTCCACGTCCTCCCATCAGCCTGCGGTGGTTCAG
TGGAAGTTCAAATCCTACTGCCAGGATCGCATGGGAGAATCCTTGGGCATGTCTTCTCCCCGAGCCCAAG
CGCTCAGCAAGAGGAACCTGGAATGGGACCCCTACTTGGATTGTTTAGACAGCAGAAGGACCGTCCGAGT
GGTAGCTTCCAAACAGGGCTCGACGGTTACCCTGGGAGATTTCTACAGGGGCAGAGAGATCACAATAGTT
CACGATGCAGATCTTCAAATTGGAAAGCTCATGTGGGGAGACAGCGGACTCTACTACTGTATCATCACCA
CCCCGGATGACCTGGAAGGCAAAAACGAAGACTCAGTGGAACTGCTGGTGTTGGGCAGGACAGGGCTGCT
TGCTGATCTCTTGCCCAGTTTTGCTGTGGAGATTATGCCAGAGTGGGTGTTTGTCGGCCTGGTGATCCTG
GGGATTTTCCTCTTCTTCGTGCTGGTGGGGATCTGCTGGTGCCAATGCTGCCCTCACAGTTGCTGCTGCT
ATGTCCGCTGCCCATGCTGCCCAGATTCCTGCTGCTGCCCTCAGGCCTTTCGCAAAGGTTACCGGATCCA
GGCTGACAAAGAGAGAGACTCCATGAAGGTCCTGTACTATGTCGAGAAGGAGCTGGCTCAGTTTGATCCA
GCCAGGAGGATGAGAGGCAGATATAACAACACCATCTCGGAACTCAGCTCCCTGCATGATGATGACAGCA
ATTTCCGCCAGTCTTACCACCAGATGCGGAATAAGCAGTTCCCTATGTCTGGAGACCTGGAAAGCAATCC
TGACTACTGGTCAGGTGTCATGGGAGGCAACAGTGGGACCAACAGGGGGCCAGCCTTGGAGTATAACAAA
GAGGACCGTGAGAGCTTCAGGCACAGCCAGCAGCGCTCCAAATCTGAGATGCTGTCGCGGAAGAACTTTG
CCACGGGCGTGCCGGCCGTGTCGATGGACGAGCTGGCAGCCTTCGCAGACTCGTACGGCCAGCGGTCGCG
GCGCGCCAATGGCAACAGCCACGAGGCGCGGGCGGGGAGCCGCTTCGAGCGCTCGGAGTCGCGGGCCCAC
GGTGCCTTCTACCAGGACGGCTCGCTGGATGAGTACTACGGGCGCGGACGCAGTCGCGAGCCGCCGGGAG
ACGGGGAGCGTGGCTGGACCTACAGCCCCGCACCCGCACGCCGCCGGCCGCCAGAGGATGCGCCTCTGCC
GCGCCTGGTGAGCCGGACCCCGGGCACCGCGCCCAAGTACGATCACTCGTACCTGAGCAGCGTGCTGGAG
CGCCAGGCGCGGCCGGAGAGCAGCAGCCGCGGGGGCAGCCTGGAGACGCCGTCCAAGCTGGGCGCGCAGC
TGGGCCCGCGCAGCGCATCCTACTACGCCTGGTCGCCGCCAACCACATACAAAGCTGGGGCCAGCGAGGG
CGAAGACGAGGACGACGCGGCGGATGAGGACGCGCTGCCACCCTACAGCGAGCTGGAGCTGAGCCGCGGA
GAGCTGAGCCGGGGCCCGTCCTACCGTGGGCGTGACCTGTCCTTCCACAGCAACTCGGAGAAGAGGAGGA
AAAAGGAGCCCGCCAAGAAACCCGGCGACTTTCCAACCAGGATGTCCCTTGTAGTCTGA

Translation (602 aa):
MPAFPTLDLDGKLGKMDRVVLGWTAVFWLTAMVEGLQVTVPDKKKVAMLFQPTVLRCHFSTSSHQPAVVQ
WKFKSYCQDRMGESLGMSSPRAQALSKRNLEWDPYLDCLDSRRTVRVVASKQGSTVTLGDFYRGREITIV
HDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDSVELLVLGRTGLLADLLPSFAVEIMPEWVFVGLVIL
GIFLFFVLVGICWCQCCPHSCCCYVRCPCCPDSCCCPQAFRKGYRIQADKERDSMKVLYYVEKELAQFDP
ARRMRGRYNNTISELSSLHDDDSNFRQSYHQMRNKQFPMSGDLESNPDYWSGVMGGNSGTNRGPALEYNK
EDRESFRHSQQRSKSEMLSRKNFATGVPAVSMDELAAFADSYGQRSRRANGNSHEARAGSRFERSESRAH
GAFYQDGSLDEYYGRGRSREPPGDGERGWTYSPAPARRRPPEDAPLPRLVSRTPGTAPKYDHSYLSSVLE
RQARPESSSRGGSLETPSKLGAQLGPRSASYYAWSPPTTYKAGASEGEDEDDAADEDALPPYSELELSRG
ELSRGPSYRGRDLSFHSNSEKRRKKEPAKKPGDFPTRMSLVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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