CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS87458.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
87458.1	Public	Homo sapiens	6	SYNE1	24	110	108

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Attributes
Inferred exon combination

Sequence IDs included in CCDS 87458.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000354674.5	ENSP00000346701.4	MANE Plus Clinical	Accepted	alive
		NCBI	NM_001347702.2	NP_001334631.1	MANE Plus Clinical	Accepted	alive

Chromosomal Locations for CCDS 87458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)

Genome Browser links:

Chromosome	Start	Stop
6	152122436	152122676
6	152130720	152130778
6	152132122	152132214
6	152133276	152133488
6	152135104	152135232
6	152136618	152136818
6	152139950	152140161
6	152141203	152141329
6	152143623	152143765
6	152145487	152145555
6	152148045	152148378
6	152149477	152149668
6	152151553	152151690
6	152151959	152152141
6	152154892	152155042
6	152155910	152156097
6	152164163	152164325
6	152168113	152168204

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGGTGGTGGCGGAGGACCTGAGTGCCCTGAGGATGGCAGAGGACAGCTGTGTGGATGCAGATCTCCCAG ATTGTAACTGCGATGTCACAAGGGTGAAGAAGCTGAAGGAGACCCTGGTAGCCGTGCAGCAGCTTGATAA GAACATGAGCAGCCTGAGGACCTGGCTCGCTCACATCGAGTCAGAGCTGGCCAAGCCAATAGTCTACGAT TCCTGTAACTCGGAAGAAATACAGAGAAAGCTTAATGAGCAGCAGGAGCTTCAGAGAGACATAGAGAAGC ACAGTACAGGTGTTGCATCTGTCCTCAACCTGTGTGAAGTCCTGCTGCACGACTGTGACGCCTGTGCCAC TGATGCCGAGTGTGACTCTATACAGCAGGCTACGAGAAACCTGGACCGGCGGTGGAGAAACATTTGTGCT ATGTCCATGGAAAGGAGGCTGAAAATCGAAGAGACGTGGCGATTGTGGCAGAAATTTCTGGATGACTATT CACGTTTTGAAGATTGGCTGAAGTCTTCAGAAAGGACAGCTGCTTTTCCCAGCTCTTCTGGGGTGATCTA TACAGTTGCCAAGGAAGAACTAAAGAAATTTGAGGCTTTCCAGCGACAGGTCCACGAGTGCCTGACGCAG CTGGAACTGATCAACAAGCAGTACCGCCGCCTGGCCAGGGAGAACCGCACTGATTCAGCATGTAGCCTCA AACAGATGGTTCACGAAGGCAACCAGAGATGGGACAACCTGCAAAAGCGTGTCACCTCCATCTTGCGCAG ACTCAAGCATTTTATTGGCCAGCGTGAGGAGTTTGAGACTGCGCGGGACAGCATTCTGGTCTGGCTCACA GAGATGGATCTGCAGCTCACTAATATTGAACATTTTTCTGAGTGTGATGTTCAAGCTAAAATAAAGCAAC TCAAGGCCTTCCAGCAGGAAATTTCACTGAACCACAATAAGATTGAGCAGATAATTGCCCAAGGAGAACA GCTGATAGAAAAGAGTGAGCCCTTGGATGCAGCGATCATCGAGGAGGAACTAGATGAGCTCCGACGGTAC TGCCAGGAGGTCTTCGGGCGTGTGGAAAGATACCATAAGAAACTGATCCGCCTGCCTCTCCCAGACGATG AGCACGACCTCTCAGACAGGGAGCTGGAGCTGGAAGACTCTGCAGCTCTGTCGGACCTGCACTGGCACGA CCGCTCTGCAGACAGCCTGCTTTCTCCACAGCCTTCCTCCAATCTCTCCCTCTCGCTCGCTCAGCCCCTC CGGAGCGAGCGGTCAGGACGAGACACCCCGGCTAGTGTGGACTCCATCCCCCTGGAGTGGGATCACGACT ATGACCTCAGTCGGGACCTGGAGTCTGCAATGTCCAGAGCTCTGCCCTCTGAGGATGAAGAAGGTCAGGA TGACAAAGATTTCTACCTCCGGGGAGCTGTTGGCTTATCAGATGTAATGATCCCCGAAAGCCCTGAGGCC TATGTAAAACTCACAGAAAATGCAATCAAAAATACCTCCGGGGACCACAGTGCCCTAGAGTCACAGATCC GACAACTGGGCAAAGCCCTGGATGATAGCCGTTTTCAGATACAGCAAACCGAAAATATCATTCGCAGCAA AACTCCCACGGGGCCGGAGCTAGACACCAGCTACAAAGGCTACATGAAACTGCTGGGCGAATGCAGTAGC AGTATAGACTCCGTGAAGAGACTGGAGCACAAACTGAAGGAGGAAGAGGAGAGCCTTCCTGGCTTTGTTA ACCTGCATAGTACCGAAACCCAAACGGCTGGTGTGATTGACCGATGGGAGCTTCTCCAGGCCCAGGCATT GAGCAAGGAGTTGAGGATGAAGCAGAACCTCCAGAAGTGGCAGCAGTTTAACTCAGACTTGAACAGCATC TGGGCCTGGCTGGGGGACACGGAGGAGGAGTTGGAACAGCTCCAGCGTCTGGAACTCAGCACTGACATCC AGACCATCGAGCTCCAGATCAAAAAGCTCAAGGAGCTCCAGAAAGCTGTGGACCACCGCAAAGCCATCAT CCTCTCCATCAATCTCTGCAGCCCTGAGTTCACCCAGGCTGACAGCAAGGAGAGCCGGGACCTGCAGGAT CGCTTGTCGCAGATGAATGGGCGCTGGGACCGAGTGTGCTCTCTGCTGGAGGAGTGGCGGGGCCTGCTGC AGGATGCCCTGATGCAGTGCCAGGGTTTCCATGAAATGAGCCATGGTTTGCTTCTTATGCTGGAGAACAT TGACAGAAGGAAAAATGAAATTGTCCCTATTGATTCTAACCTTGATGCAGAGATACTTCAGGACCATCAC AAACAGCTTATGCAAATAAAGCATGAGCTGTTGGAATCCCAACTCAGAGTAGCCTCTTTGCAAGACATGT CTTGCCAACTACTGGTGAATGCTGAAGGAACAGACTGTTTAGAAGCCAAAGAAAAAGTCCATGTTATTGG AAATCGGCTCAAACTTCTCTTGAAGGAGGTCAGTCGTCATATCAAGGAACTGGAGAAGTTATTAGACGTG TCAAGTAGTCAGCAGGATTTGTCTTCCTGGTCTTCTGCTGATGAACTGGACACCTCAGGGTCTGTGAGTC CCACATCAGGAAGGAGCACCCCAAACAGACAGAAAACGCCACGAGGCAAGTGTAGTCTCTCACAGCCTGG ACCCTCTGTCAGCAGTCCACATAGCAGGTCCACAAAAGGTGGCTCCGATTCCTCCCTTTCTGAGCCAGGG CCAGGTCGGTCCGGCCGCGGCTTCCTGTTCAGAGTCCTCCGAGCAGCTCTTCCCCTTCAGCTTCTCCTGC TCCTCCTCATCGGGCTTGCCTGCCTTGTACCAATGTCAGAGGAAGACTACAGCTGTGCCCTCTCCAACAA CTTTGCCCGGTCATTCCACCCCATGCTCAGATACACGAATGGCCCTCCTCCACTCTGA
Translation (975 aa):
MVVAEDLSALRMAEDSCVDADLPDCNCDVTRVKKLKETLVAVQQLDKNMSSLRTWLAHIESELAKPIVYD SCNSEEIQRKLNEQQELQRDIEKHSTGVASVLNLCEVLLHDCDACATDAECDSIQQATRNLDRRWRNICA MSMERRLKIEETWRLWQKFLDDYSRFEDWLKSSERTAAFPSSSGVIYTVAKEELKKFEAFQRQVHECLTQ LELINKQYRRLARENRTDSACSLKQMVHEGNQRWDNLQKRVTSILRRLKHFIGQREEFETARDSILVWLT EMDLQLTNIEHFSECDVQAKIKQLKAFQQEISLNHNKIEQIIAQGEQLIEKSEPLDAAIIEEELDELRRY CQEVFGRVERYHKKLIRLPLPDDEHDLSDRELELEDSAALSDLHWHDRSADSLLSPQPSSNLSLSLAQPL RSERSGRDTPASVDSIPLEWDHDYDLSRDLESAMSRALPSEDEEGQDDKDFYLRGAVGLSDVMIPESPEA YVKLTENAIKNTSGDHSALESQIRQLGKALDDSRFQIQQTENIIRSKTPTGPELDTSYKGYMKLLGECSS SIDSVKRLEHKLKEEEESLPGFVNLHSTETQTAGVIDRWELLQAQALSKELRMKQNLQKWQQFNSDLNSI WAWLGDTEEELEQLQRLELSTDIQTIELQIKKLKELQKAVDHRKAIILSINLCSPEFTQADSKESRDLQD RLSQMNGRWDRVCSLLEEWRGLLQDALMQCQGFHEMSHGLLLMLENIDRRKNEIVPIDSNLDAEILQDHH KQLMQIKHELLESQLRVASLQDMSCQLLVNAEGTDCLEAKEKVHVIGNRLKLLLKEVSRHIKELEKLLDV SSSQQDLSSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPGPSVSSPHSRSTKGGSDSSLSEPG PGRSGRGFLFRVLRAALPLQLLLLLLIGLACLVPMSEEDYSCALSNNFARSFHPMLRYTNGPPPL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH