NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87073.1 Public Homo sapiens 3 ELP6 24 110 108 CCDS HistoryNCBI Gene:54859Re-query CCDS DB by CCDS ID:87073.1Re-query CCDS DB by GeneID:54859See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439305.5 ENSP00000402399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000439305.5Link to Ensembl Protein Viewer:ENSP00000402399.1Re-query CCDS DB by Nucleotide ID:ENST00000439305Re-query CCDS DB by Protein ID:ENSP00000402399
Original member Current member EBI ENST00000446787.5 ENSP00000412593.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446787.5Link to Ensembl Protein Viewer:ENSP00000412593.1Re-query CCDS DB by Nucleotide ID:ENST00000446787Re-query CCDS DB by Protein ID:ENSP00000412593
Original member Current member NCBI NM_001363957.1 NP_001350886.1 Accepted alive Link to Nucleotide Sequence:NM_001363957.1Link to Protein Sequence:NP_001350886.1Re-query CCDS DB by Nucleotide ID:NM_001363957Re-query CCDS DB by Protein ID:NP_001350886Link to BLAST:NP_001350886.1

Chromosomal Locations for CCDS 87073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 47496069 47496197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47498286 47498432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47501650 47501851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 47504330 47504433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCGCGGGAGCGTGGGCAGCTTGTGTTCCTTGAGGGACTCAAGTCTGCAGTGGACGTCGTCTTCCAGG
CTCAAAAGGAGCCACACCCCCTGCAGTTTCTCAGGGAGGCTAATGCTGGGAACTTGAAACCATTGTTTGA
GTTTGTACGGGAGGCCCTGAAGCCAGTAGACAGTGGAGAGGCTCGGTGGACGTACCCGGTGCTGTTGGTG
GACGACCTCAGTGTGCTCCTGAGCCTGGGCATGGGGGCGGTGGCTGTGCTAGACTTCATTCACTACTGCA
GAGCCACCGTGTGCTGGGAACTAAAGGGAAACATGGTGGTCCTTGTGCACGACAGTGGAGATGCGGAGGA
TGAGGAGAATGACATCCTGCTGAATGGCCTCAGTCATCAGAGCCATCTGATACTGCGGGCTGAGGGCCTG
GCCACTGGCTTCTGCAGGGATGTGCACGGGCAGCTGAGGATCCTGTGGAGGAGACCATCGCAGCCCGCAG
TCCACCGGGATCAGAGCTTCACTTACCAGTATAAGATACAGGACAAAAGCGTGTCCTTTTTTGCCAAAGG
AATGTCTCCTGCTGTTCTGTGA

Translation (193 aa):
MARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLV
DDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRAEGL
ATGFCRDVHGQLRILWRRPSQPAVHRDQSFTYQYKIQDKSVSFFAKGMSPAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH