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Report for CCDS87030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87030.1 Public Homo sapiens 22 SEPTIN3 24 110 108 CCDS HistoryNCBI Gene:55964Re-query CCDS DB by CCDS ID:87030.1Re-query CCDS DB by GeneID:55964See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000644076.2 ENSP00000494051.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644076.2Link to Ensembl Protein Viewer:ENSP00000494051.1Re-query CCDS DB by Nucleotide ID:ENST00000644076Re-query CCDS DB by Protein ID:ENSP00000494051
Original member Current member NCBI NM_001363845.2 NP_001350774.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363845.2Link to Protein Sequence:NP_001350774.1Re-query CCDS DB by Nucleotide ID:NM_001363845Re-query CCDS DB by Protein ID:NP_001350774Link to BLAST:NP_001350774.1

Chromosomal Locations for CCDS 87030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41971493 41972996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41981645 41981836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41985984 41986112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41987206 41987287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41987622 41987759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41989567 41989684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41991573 41991668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41992664 41992763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41994290 41994341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41994621 41994714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41996902 41996967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGACCACAACTTTGCTCCTGCTCCTCCAGAGATGCAGTCGCATGGAGCTCCAGGCCCGGGAACCTCCT
TCTCCCATAGCCATGTGCTGGGGCGCCCTATCCGCCCCTCGAGACTCCCTGGAGGAGGGTCCCCCCTCAC
CCCCGTCCTCAGGAAGACCATCCATCTGGATACCTTCCCCCAAAGCCATATCCCACAGACCTCCAGCCGG
CTGGGCCTTGGAGCCAGGACCCGGAGTGTGCCCCCACAGGAGACGGGCATCGCTCTGGGGGCTTCCTTGA
GCCCCCTGCCCACCAGCAGCCTTGTACCCAGGAAGCTCAGCTCCATCTCCTTGACTCTCCATCAGAACAG
CCAGGCACGGTCCCTGGATCGCCCACTTTCTCACTGGGAAGAGTTGCCTACCCCAGGAAAGAAGGCTGCT
CCCCATGAAGGAGGGAGGGTGTCCTCGCCAGGCTCGCCACCTGTGACCCTAGTGCCAGGGGGCAGGGTCC
ACTCTGAGGGCCCAGGGAACCCAGGTCTGACCAAATCCAACAGGATGCTTGCCACGGAGAAGCCCCTGGT
GAGTTCCTACCTAGCCTTACCTTTCCAATCCCGGTTAGCCCAGAGTGCACCAGTCCTTGCAGAGCCAGGC
TCGTTGGGCCAGGGGCACCTTGTCTCAGTGACTGACCACATGCCTACCAGAGCTTCTCCAGGAAAAGGCA
AGCCCCGGGCCAGGGGGATCCCCAGACCCCGGGGGCGTCTCCAAAGGGCCAACACGACTGTGAATTTGAC
TGCTATGGACACAAGGACAGACGCAGCCAGACATTTAGCCACAATGGCCACCAACAGACCTAGCTTGGCT
ATCAATTTAGCCACACCAAACACATCCCAACTGGACACAGGCACAGAGTTCCCTGCCCTGGATATCAAGC
TGGGCACAGCCAGAGACTTGTCTTCGGTAGGGACAGTCAAGTCAGGCAAAACCGTGAACTTGGCTACAGC
AGGCACAATCAAGCCGGGCACAGCCATGAATCTGACTACAGTTGGGACAACCAAGCCAGGGATGGTCATG
GATTTGATAGCCTCAGAACCAGACAAGCTGGGCAAAGCCATGGCTACAAGAAGCACAGCCAAACCAGATA
TGACCACAGAGGGTATAGCCATGGATTCAGCAACATCAGACCCAGTCAAGCCGGACACAATCACAGCTAC
AGTGGGCACCAGTAGGTTGGAAACAGCCATGGCTTTGGCCAGAGTGAACAGAGCCAAGCTGGGCACGGCT
AAGAATTCTCTTGCTTTGGACACAAGCAGGATGGGCACAGCTGTGGGTTCAGTTGTGCCAGTAACCCCAG
ACCCAGCCACTGGGAAGACCACACTGGGCAGTGTTAATAACCTAACCATATCAGACGTTGCTACATGCCT
GCTAATGCCAAGCAGATCCACAGACCTAGCCCTGGACAACACTAATGCTGCCATGGACAGAGCCACAGAG
CCTGCCTCACTGGACCTGGCCACAGAATACAAAGGGCTCCCAGAGACCAGGACGGACGCAGCCATGTCAG
AGCTGGTGCCTGAGCCCAGGCCTAAGCCAGCGGTGCCCATGAAGCCCATGAGCATCAACTCCAACCTGCT
GGGCTACATCGGCATCGACACCATCATCGAGCAGATGCGCAAGAAGACCATGAAGACCGGTTTCGACTTC
AACATCATGGTCGTTGGCCAGAGTGGACTGGGCAAATCAACGCTGGTCAACACGCTCTTCAAATCCCAAG
TGAGCCGCAAGGCCTCCAGCTGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAGCTATCGG
GCATGTGATAGAGGAAGGCGGTGTCAAAATGAAGCTGACCGTCATCGACACCCCAGGCTTTGGAGACCAA
ATCAACAATGAAAACTGCTGGGAGCCCATTGAGAAGTACATCAATGAGCAGTACGAGAAGTTCCTGAAGG
AGGAGGTCAACATCGCCAGGAAGAAACGCATCCCTGACACTCGTGTCCACTGCTGCCTTTACTTCATCTC
TCCCACAGGACACTCCTTGCGACCTCTGGATCTTGAGTTCATGAAACACCTCAGCAAGGTTGTGAACATC
ATCCCTGTCATTGCTAAGGCTGACACCATGACCCTGGAGGAGAAGTCTGAATTCAAGCAAAGGGTTCGCA
AGGAGCTTGAAGTAAATGGCATTGAATTCTACCCCCAGAAGGAATTTGATGAGGATTTGGAGGATAAGAC
GGAGAATGACAAAATCAGGCAGGAGAGCATGCCTTTTGCTGTGGTGGGAAGTGACAAGGAGTACCAAGTG
AATGGCAAGAGGGTCCTCGGCCGAAAAACTCCATGGGGGATCATCGAAGTGGAAAACCTCAACCACTGTG
AGTTTGCCCTGCTTCGAGACTTTGTCATCAGGACCCACCTCCAGGACCTCAAGGAAGTGACACACAACAT
CCACTATGAGACTTACAGGGCCAAGCGGCTCAATGACAATGGAGGCCTCCCTCCGGGAGAAGGCCTCCTG
GGCACTGTCCTTCCACCTGTGCCAGCCACCCCCTGCCCCACTGCTGAATGA

Translation (856 aa):
MDHNFAPAPPEMQSHGAPGPGTSFSHSHVLGRPIRPSRLPGGGSPLTPVLRKTIHLDTFPQSHIPQTSSR
LGLGARTRSVPPQETGIALGASLSPLPTSSLVPRKLSSISLTLHQNSQARSLDRPLSHWEELPTPGKKAA
PHEGGRVSSPGSPPVTLVPGGRVHSEGPGNPGLTKSNRMLATEKPLVSSYLALPFQSRLAQSAPVLAEPG
SLGQGHLVSVTDHMPTRASPGKGKPRARGIPRPRGRLQRANTTVNLTAMDTRTDAARHLATMATNRPSLA
INLATPNTSQLDTGTEFPALDIKLGTARDLSSVGTVKSGKTVNLATAGTIKPGTAMNLTTVGTTKPGMVM
DLIASEPDKLGKAMATRSTAKPDMTTEGIAMDSATSDPVKPDTITATVGTSRLETAMALARVNRAKLGTA
KNSLALDTSRMGTAVGSVVPVTPDPATGKTTLGSVNNLTISDVATCLLMPSRSTDLALDNTNAAMDRATE
PASLDLATEYKGLPETRTDAAMSELVPEPRPKPAVPMKPMSINSNLLGYIGIDTIIEQMRKKTMKTGFDF
NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ
INNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNI
IPVIAKADTMTLEEKSEFKQRVRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQV
NGKRVLGRKTPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRLNDNGGLPPGEGLL
GTVLPPVPATPCPTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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