NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86700.1 Public Homo sapiens 19 SLC44A2 24 110 108 CCDS HistoryNCBI Gene:57153Re-query CCDS DB by CCDS ID:86700.1Re-query CCDS DB by GeneID:57153See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000586078.5 ENSP00000466664.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586078.5Link to Ensembl Protein Viewer:ENSP00000466664.1Re-query CCDS DB by Nucleotide ID:ENST00000586078Re-query CCDS DB by Protein ID:ENSP00000466664
Original member Current member NCBI NM_001363611.2 NP_001350540.1 Accepted alive Link to Nucleotide Sequence:NM_001363611.2Link to Protein Sequence:NP_001350540.1Re-query CCDS DB by Nucleotide ID:NM_001363611Re-query CCDS DB by Protein ID:NP_001350540Link to BLAST:NP_001350540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350540.1 711 Q8IWA5-2 711 100% 0 0

Chromosomal Locations for CCDS 86700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10625634 10625670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10626253 10626301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10627722 10627795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10627920 10628004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10631057 10631141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10631275 10631385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10631475 10631535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10631626 10631749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10631868 10631951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10632044 10632156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10634756 10634887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10634974 10635073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10635163 10635255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10635431 10635515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10636323 10636585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10636662 10636756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10637644 10637747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10637856 10637929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10638023 10638093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10638227 10638315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10642367 10642451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10642897 10643018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGGGGACGAGCGGCCCCACTACTACGGGAAACACGGAACGCCACAGAAGTATGATCCCACTTTCAAAG
GACCCATTTACAATAGGGGCTGCACGGATATCATATGCTGTGTGTTCCTGCTCCTGGCCATTGTGGGCTA
CGTGGCTGTAGGCATCATAGCCTGGACTCATGGAGACCCTCGAAAGGTGATCTACCCCACTGACAGCCGG
GGCGAGTTCTGCGGGCAGAAGGGCACAAAAAACGAGAACAAACCCTATCTGTTTTATTTCAACATTGTGA
AATGTGCCAGCCCCCTGGTTCTGCTGGAATTCCAATGTCCCACTCCCCAGATCTGCGTGGAAAAATGCCC
CGACCGCTACCTCACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAGTACTATAAGCAGTTCTGTGTT
CCTGGCTTCAAGAACAATAAAGGAGTGGCTGAGGTGCTTCAAGATGGTGACTGCCCTGCTGTCCTCATCC
CCAGCAAACCCTTGGCCCGGAGATGCTTCCCCGCTATCCACGCCTACAAGGGTGTCCTGATGGTGGGCAA
TGAGACGACCTATGAGGATGGGCATGGCTCCCGGAAAAACATCACAGACCTGGTGGAGGGCGCCAAGAAA
GCCAATGGAGTCCTAGAGGCGCGGCAACTCGCCATGCGCATATTTGAAGATTACACCGTCTCTTGGTACT
GGATTATCATAGGCCTGGTCATTGCCATGGCGATGAGCCTCCTGTTCATCATCCTGCTTCGCTTCCTGGC
TGGTATTATGGTCTGGGTGATGATCATCATGGTGATTCTGGTGCTGGGCTACGGAATATTTCACTGCTAC
ATGGAGTACTCCCGACTGCGTGGTGAGGCCGGCTCTGATGTCTCTTTGGTGGACCTCGGCTTTCAGACGG
ATTTCCGGGTGTACCTGCACTTACGGCAGACCTGGTTGGCCTTTATGATCATTCTGAGTATCCTTGAAGT
CATTATCATCTTGCTGCTCATCTTTCTCCGGAAGAGAATTCTCATCGCGATTGCACTCATCAAAGAAGCC
AGCAGGGCTGTGGGATACGTCATGTGCTCCTTGCTCTACCCACTGGTCACCTTCTTCTTGCTGTGCCTCT
GCATCGCCTACTGGGCCAGCACTGCTGTCTTCCTGTCCACTTCCAACGAAGCGGTCTATAAGATCTTTGA
TGACAGCCCCTGCCCATTTACTGCGAAAACCTGCAACCCAGAGACCTTCCCCTCCTCCAATGAGTCCCGC
CAATGCCCCAATGCCCGTTGCCAGTTCGCCTTCTACGGTGGTGAGTCGGGCTACCACCGGGCCCTGCTGG
GCCTGCAGATCTTCAATGCCTTCATGTTCTTCTGGTTGGCCAACTTCGTGCTGGCGCTGGGCCAGGTCAC
GCTGGCCGGGGCCTTTGCCTCCTACTACTGGGCCCTGCGCAAGCCGGACGACCTGCCGGCCTTCCCGCTC
TTCTCTGCCTTTGGCCGGGCGCTCAGGTACCACACAGGCTCCCTGGCCTTTGGCGCGCTCATCCTGGCCA
TTGTGCAGATCATCCGTGTGATACTCGAGTACCTGGATCAGCGGCTGAAAGCTGCAGAGAACAAGTTTGC
CAAGTGCCTCATGACCTGTCTCAAATGCTGCTTCTGGTGCCTGGAGAAGTTCATCAAATTCCTTAATAGG
AATGCCTACATCATGATTGCCATCTACGGCACCAATTTCTGCACCTCGGCCAGGAATGCCTTCTTCCTGC
TCATGAGAAACATCATCAGAGTGGCTGTCCTGGATAAAGTTACTGACTTCCTCTTCCTGTTGGGCAAACT
TCTGATCGTTGGTAGTGTGGGGATCCTGGCTTTCTTCTTCTTCACCCACCGTATCAGGATCGTGCAGGAT
ACAGCACCACCCCTCAATTATTACTGGGTTCCTATACTGACGGTGATCGTTGGCTCCTACTTGATTGCAC
ACGGTTTCTTCAGCGTCTATGGCATGTGTGTGGACACGCTGTTCCTCTGCTTCTGTGAGGACCTGGAAAG
GAATGACGGCTCTCAGGAGCGACCCTACTTCATGTCGCCCGAGCTGAGAGACATCCTGTTGAAGGGGAGT
GCGGAGGAGGGGAAGCGGGCAGAAGCCGAGGAGTAG

Translation (711 aa):
MGDERPHYYGKHGTPQKYDPTFKGPIYNRGCTDIICCVFLLLAIVGYVAVGIIAWTHGDPRKVIYPTDSR
GEFCGQKGTKNENKPYLFYFNIVKCASPLVLLEFQCPTPQICVEKCPDRYLTYLNARSSRDFEYYKQFCV
PGFKNNKGVAEVLQDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYEDGHGSRKNITDLVEGAKK
ANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMVILVLGYGIFHCY
MEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEA
SRAVGYVMCSLLYPLVTFFLLCLCIAYWASTAVFLSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESR
QCPNARCQFAFYGGESGYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPL
FSAFGRALRYHTGSLAFGALILAIVQIIRVILEYLDQRLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNR
NAYIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQD
TAPPLNYYWVPILTVIVGSYLIAHGFFSVYGMCVDTLFLCFCEDLERNDGSQERPYFMSPELRDILLKGS
AEEGKRAEAEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH