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Report for CCDS8648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8648.1 Public Homo sapiens 12 MANSC1 24 110 108 CCDS HistoryNCBI Gene:54682Re-query CCDS DB by CCDS ID:8648.1Re-query CCDS DB by GeneID:54682See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535902.6 ENSP00000438205.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535902.6Link to Ensembl Protein Viewer:ENSP00000438205.1Re-query CCDS DB by Nucleotide ID:ENST00000535902Re-query CCDS DB by Protein ID:ENSP00000438205
Original member Current member NCBI NM_018050.4 NP_060520.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018050.4Link to Protein Sequence:NP_060520.2Re-query CCDS DB by Nucleotide ID:NM_018050Re-query CCDS DB by Protein ID:NP_060520Link to BLAST:NP_060520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060520.2 431 Q9H8J5-1 431 100% 0 0

Chromosomal Locations for CCDS 8648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 12330027 12330958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12338420 12338560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12343092 12343314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGTTCTTCGGGGGAGAAGGGAGCTTGACTTACACTTTGGTAATAATTTGCTTCCTGACACTAAGGCTGT
CTGCTAGTCAGAATTGCCTCAAAAAGAGTCTAGAAGATGTTGTCATTGACATCCAGTCATCTCTTTCTAA
GGGAATCAGAGGCAATGAGCCCGTATATACTTCAACTCAAGAAGACTGCATTAATTCTTGCTGTTCAACA
AAAAACATATCAGGGGACAAAGCATGTAACTTGATGATCTTCGACACTCGAAAAACAGCTAGACAACCCA
ACTGCTACCTATTTTTCTGTCCCAACGAGGAAGCCTGTCCATTGAAACCAGCAAAAGGACTTATGAGTTA
CAGGATAATTACAGATTTTCCATCTTTGACCAGAAATTTGCCAAGCCAAGAGTTACCCCAGGAAGATTCT
CTCTTACATGGCCAATTTTCACAAGCAGTCACTCCCCTAGCCCATCATCACACAGATTATTCAAAGCCCA
CCGATATCTCATGGAGAGACACACTTTCTCAGAAGTTTGGATCCTCAGATCACTTGGAGAAACTATTTAA
GATGGATGAAGCAAGTGCCCAGCTCCTTGCTTATAAGGAAAAAGGCCATTCTCAGAGTTCACAATTTTCC
TCTGATCAAGAAATAGCTCATCTGCTGCCTGAAAATGTGAGTGCGCTCCCAGCTACGGTGGCAGTTGCTT
CTCCACATACCACCTCGGCTACTCCAAAGCCCGCCACCCTTCTACCCACCAATGCTTCAGTGACACCTTC
TGGGACTTCCCAGCCACAGCTGGCCACCACAGCTCCACCTGTAACCACTGTCACTTCTCAGCCTCCCACG
ACCCTCATTTCTACAGTTTTTACACGGGCTGCGGCTACACTCCAAGCAATGGCTACAACAGCAGTTCTGA
CTACCACCTTTCAGGCACCTACGGACTCGAAAGGCAGCTTAGAAACCATACCGTTTACAGAAATCTCCAA
CCTAACTTTGAACACAGGGAATGTGTATAACCCTACTGCACTTTCTATGTCAAATGTGGAGTCTTCCACT
ATGAATAAAACTGCTTCCTGGGAAGGTAGGGAGGCCAGTCCAGGCAGTTCCTCCCAGGGCAGTGTTCCAG
AAAATCAGTACGGCCTTCCATTTGAAAAATGGCTTCTTATCGGGTCCCTGCTCTTTGGTGTCCTGTTCCT
GGTGATAGGCCTCGTCCTCCTGGGTAGAATCCTCTCGGAATCACTCCGCAGGAAACGTTACTCAAGACTG
GATTATTTGATCAATGGGATCTATGTGGACATCTAA

Translation (431 aa):
MFFGGEGSLTYTLVIICFLTLRLSASQNCLKKSLEDVVIDIQSSLSKGIRGNEPVYTSTQEDCINSCCST
KNISGDKACNLMIFDTRKTARQPNCYLFFCPNEEACPLKPAKGLMSYRIITDFPSLTRNLPSQELPQEDS
LLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSSDHLEKLFKMDEASAQLLAYKEKGHSQSSQFS
SDQEIAHLLPENVSALPATVAVASPHTTSATPKPATLLPTNASVTPSGTSQPQLATTAPPVTTVTSQPPT
TLISTVFTRAAATLQAMATTAVLTTTFQAPTDSKGSLETIPFTEISNLTLNTGNVYNPTALSMSNVESST
MNKTASWEGREASPGSSSQGSVPENQYGLPFEKWLLIGSLLFGVLFLVIGLVLLGRILSESLRRKRYSRL
DYLINGIYVDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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