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Report for CCDS85967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85967.1 Public Homo sapiens 1 KLF18 24 110 108 CCDS HistoryNCBI Gene:105378952Re-query CCDS DB by CCDS ID:85967.1Re-query CCDS DB by GeneID:105378952See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 85967.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000634670.1 ENSP00000489024.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000634670.1Link to Ensembl Protein Viewer:ENSP00000489024.1Re-query CCDS DB by Nucleotide ID:ENST00000634670Re-query CCDS DB by Protein ID:ENSP00000489024
Original member Current member NCBI NM_001358438.1 NP_001345367.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001358438.1Link to Protein Sequence:NP_001345367.1Re-query CCDS DB by Nucleotide ID:NM_001358438Re-query CCDS DB by Protein ID:NP_001345367Link to BLAST:NP_001345367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345367.1 1052 A0A0U1RQI7 1052 100% 0 0

Chromosomal Locations for CCDS 85967.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44137821 44138011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44138664 44141631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3159 nt):
ATGGATTCCAGTCTTCTCCAGGCAATTGAGGAAATTGAGAAATTTTTCCAGCATCTCTCTGAGCGGCATA
CAGAACAGGCAGAAACCCCAGATGCACCAGAACCACAGAACTGTATGCCTCTGACTGCCCATGCTGAGGA
GAGCCAACATGAGTCAACCCAGAGCAAGACGATGCCTCCCTTGGGGTCCACAATGATGACTTCTGCATGC
ACTAACATCCCTGGGACAGTTCTCACCCAGGACTTAACAATGCACCCTCTTAAAGCCCTTGAAGACCTAA
GTGAGACTTATTCCATGGGCCAGAAAGTGACTTCCTTTGATCAGGTAAAACACACAGCAGGCTCCCAGAT
GACAGATGTTACTGTCACCCCAAAGTCATCACCCACTGATTGCCAGAAGACAACCATCACTGCAAGCAAC
ATGACAATCTCCAATGAAAGTAGCCAGCTGAACACCCCAAGCAGTGACCAGACCCTCAATGAGAGTCAGA
TACCAGCCCTGCTTGGAGATCAGATGAAGACCCTCAGTGATAACCAGACTCTCTGTGGGGACCAGGTGAC
CTTCAGTAGTGACCAGACCCTCACTGATGGTCATACAGTGACTTCCGGTAGCGATGAGACCCTCTCTGGG
GGCCAAATGACAACCAGTCTAGACCTCTATGGAGGGCAAATGATGACTTCCATTGATAACCAGACCCTCT
GTGGGGAGCAGATGACGACCTCCAGTGGTAACCAGGCCTTCTACGGGAGACAGATGACGACCTCCACTGG
TAACCAGACCCTCTGTGGAGAGCAGATGACAACCTCCACTGGTAACCAGGCCCTCTATGGGGGGCAGATG
ACGACCTCCGCTAGTAACCAGACCCTCTGTGGAGAGCAGATGACAACCTCCACTAGTAACCAGACCCTCT
GTGGGGAGCAAGTGATGACCTCCACTGGTAACCAAGCCCTCTGTGGAGGGCAGATGACGACCTCCACTGG
TAACCAGAACCTCTATGGGGGGCAGATGATGACCTCCACTGGTAACCAGACCCTCTACTGGGGGCAGATG
ATGACCTCCACTGGTAACCAGAACCTCTGTGGAGAGCAAGTGATGACCTCCACTGGTAACCAAGCCCTCT
GTGGAGGGCAGATGACGACCTCCACTGGTAACCAGAACCTCTATGGGGGGCAGATGATGACCTCCACTGG
TAACCAGACCCTCTACTGGGGGCAGATGATGACCTCCACTGGTAACCAGAACCTCTGTGGAGAGCAAGTG
ATGACCTCCACTGGTAACCAAGCCCTCTGTGGAGGGCAGATGACGACCTCCACTGGTAACCAGAACCTCT
GTGGAGAGCAAGTGATGACCTCCACTAGTAACCAGACCCTCTGTGGAGAGCAGACGACGACCTCCACTAG
TAACCAGACCCTCTGTGGGGAGCAGGTGACGACCTCCACTGGTAACCAGGCCCTCTACGGGGGGCAGATG
ATGACCTCCACTGGTAACCAGACCCTCTACTGGGGGCAGATGATGACCTCCACTGGTAACCAGAACCTCT
GTGGAGAGCAGATGACAACCTCCACTGGTAACCAGGCCCTCTACGGGGGGCAGATGACAACCTCTACTAG
TAACCAGACCCTCTGTGGAGAGCAGATGACGACCCCCACTAGTAACCAGACCCTCTGTGGGGAGCAGGTG
ACGACCTCCACTGGTAACCAGGCCCTCTACGGGGGGCAGATCACGACCTCCACTAGTAACCAGACCCTCT
GTGGAGAGCAGATGACGACCTCCACTAGTAACCAGACCCTTTGTGGGGAGCAGGTGACGACCTCCACTGG
TAACCAGGCCCTCTATGGGGGGCAGATGATGACCTCCACTGGTAACCAGGCCCTCTACGGGGGGCAGATG
ACAACCTCTGCTAGTAACCAGACCCTCTGTGGAGAGCAGATGACAACCTCCACTAGTAACCAGACCCTCT
GTGAGGAGCAGGTGATGACCTCCACTGGTAACCAGGCCCTCTGTGGAGAGCAGATGACAACCTCCACTGG
TAACCAGGCCCTCTACGGGGGGCAGATGACGACCTCCACTAGTAACCAGACCCTCTGTGGAGAGCAGACG
ACGACCTCCACTAGTAACCAGACCCTCTGTGGGGAGCAGGTGACGACCTCCACTGGTAACCAGGCCCTCT
ATGGGGGGCAGATGATGACCTCCACTGGTAACCAGACCCTCTACTGGGGGCAGATGATGACCTCCACTGG
TAACCAGAACCTCTGTGGAGAGCAGATGACAACCTCCACTGGTAACCAGGCCCTCTACGGGGGGCAGATG
ACGACCTCTACTAGTAACCAGACCCTCTGTGGAGAGCAGATGACGACCCCCACTAGTAACCAGACCCTCT
GTGGGGAGCAGGTGACGACCTCCACTGGTAACCAGGCCCTCTACAGGGGGCAGATCACGACCTCCACTAG
TAACCAGACCCTCTGTGGAGAGCAGATGACGACCTCCACTAGTAACCAGACCCTCTGTGGGGAGCAGGTG
ACGACCTCCACTGGTAACCAGGCCCTCTATGGGGGGCAGATGATGACCTCCACTGGTAACCAGAACCTCT
ACGGGGGGCAGAATATGACCTCCACTGATAACCAGGCCCTCTATGGAGGCCAGATGGCAACATATAGTGG
CAACCAGACCCTCTATGGGGACCAGATGCTGACTCTTCAGGTGGGCAATATGACAACGCTCACTGATGAC
CACAGCCTTTATGGGGGATATATGATGTCCCATCAGTTCTCATCATTGCCATACCCAGGATTCCTATGCT
TTTCAAGTTCCCATTTGATTCAAGGACAACTCCCAAAACAGAAGACACAGAGCTGCCAGTTCTGGAAGAA
TCCTGAGGTTTCAAGGCCCTATGTCTGCACTTACGAGGACTGCAAGATGTCTTATTCAAAGGCTTGCCAC
CTCCGAACCCACATGCGCAAGCACACCGGGGAGAAGCCCTATGTATGCGATGTAGAGGGATGTACGTGGA
AATTTGCCCGCTCAGATGAGCTCAACAGACACAAGAAAAGGCACACTGGGGAAAGGCCCTACCTGTGTTC
AATATGCAGCAAGAATTTTGCAAGATCTGATCACCTAAAGCAGCATGCAAAGGTCCACAACATTCGCCCA
GGATTATGA

Translation (1052 aa):
MDSSLLQAIEEIEKFFQHLSERHTEQAETPDAPEPQNCMPLTAHAEESQHESTQSKTMPPLGSTMMTSAC
TNIPGTVLTQDLTMHPLKALEDLSETYSMGQKVTSFDQVKHTAGSQMTDVTVTPKSSPTDCQKTTITASN
MTISNESSQLNTPSSDQTLNESQIPALLGDQMKTLSDNQTLCGDQVTFSSDQTLTDGHTVTSGSDETLSG
GQMTTSLDLYGGQMMTSIDNQTLCGEQMTTSSGNQAFYGRQMTTSTGNQTLCGEQMTTSTGNQALYGGQM
TTSASNQTLCGEQMTTSTSNQTLCGEQVMTSTGNQALCGGQMTTSTGNQNLYGGQMMTSTGNQTLYWGQM
MTSTGNQNLCGEQVMTSTGNQALCGGQMTTSTGNQNLYGGQMMTSTGNQTLYWGQMMTSTGNQNLCGEQV
MTSTGNQALCGGQMTTSTGNQNLCGEQVMTSTSNQTLCGEQTTTSTSNQTLCGEQVTTSTGNQALYGGQM
MTSTGNQTLYWGQMMTSTGNQNLCGEQMTTSTGNQALYGGQMTTSTSNQTLCGEQMTTPTSNQTLCGEQV
TTSTGNQALYGGQITTSTSNQTLCGEQMTTSTSNQTLCGEQVTTSTGNQALYGGQMMTSTGNQALYGGQM
TTSASNQTLCGEQMTTSTSNQTLCEEQVMTSTGNQALCGEQMTTSTGNQALYGGQMTTSTSNQTLCGEQT
TTSTSNQTLCGEQVTTSTGNQALYGGQMMTSTGNQTLYWGQMMTSTGNQNLCGEQMTTSTGNQALYGGQM
TTSTSNQTLCGEQMTTPTSNQTLCGEQVTTSTGNQALYRGQITTSTSNQTLCGEQMTTSTSNQTLCGEQV
TTSTGNQALYGGQMMTSTGNQNLYGGQNMTSTDNQALYGGQMATYSGNQTLYGDQMLTLQVGNMTTLTDD
HSLYGGYMMSHQFSSLPYPGFLCFSSSHLIQGQLPKQKTQSCQFWKNPEVSRPYVCTYEDCKMSYSKACH
LRTHMRKHTGEKPYVCDVEGCTWKFARSDELNRHKKRHTGERPYLCSICSKNFARSDHLKQHAKVHNIRP
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