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Report for CCDS85822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85822.1 Public Mus musculus X Rps6ka3 23 108 98 CCDS HistoryNCBI Gene:110651Re-query CCDS DB by CCDS ID:85822.1Re-query CCDS DB by GeneID:110651See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112493.7 ENSMUSP00000108112.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112493.7Link to Ensembl Protein Viewer:ENSMUSP00000108112.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112493Re-query CCDS DB by Protein ID:ENSMUSP00000108112
Original member Current member NCBI NM_001346675.1 NP_001333604.1 Accepted alive Link to Nucleotide Sequence:NM_001346675.1Link to Protein Sequence:NP_001333604.1Re-query CCDS DB by Nucleotide ID:NM_001346675Re-query CCDS DB by Protein ID:NP_001333604Link to BLAST:NP_001333604.1

Chromosomal Locations for CCDS 85822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 159285281 159285322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159311464 159311580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159317921 159318002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159326841 159326921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159327772 159327851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159328371 159328477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159330558 159330595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159330787 159330929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159332151 159332221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159336695 159336783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159336963 159337027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159337186 159337288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159337918 159338042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159342585 159342710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159345340 159345429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159347016 159347174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159349252 159349413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159351364 159351440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159352316 159352433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159362642 159362782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159363363 159363485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGATGAACCTATGGGAGAGGAGGAGATTAACCCACAAACTGAAGAAGGCAGTATCAAAGAAATTGCAA
TCACACATCATGTGAAGGAAGGACATGAAAAGGCAGATCCTTCCCAGTTTGAACTTTTAAAAGTATTAGG
GCAGGGATCATTTGGAAAGGTTTTCTTAGTTAAAAAAATCTCAGGCTCTGATGCTAGACAGCTTTATGCC
ATGAAAGTATTAAAGAAGGCCACGCTGAAAGTTCGAGACCGTGTTCGGACAAAAATGGAACGTGATATCT
TGGTAGAAGTCAATCACCCTTTCATTGTCAAATTGCATTACGCTTTTCAAACGGAAGGGAAGTTGTATCT
TATTTTGGATTTTCTCAGGGGCGGAGACTTGTTTACACGCTTATCCAAAGAGGTGATGTTCACAGAGGAA
GATGTCAAATTCTACTTGGCTGAACTTGCACTTGCTTTAGACCATCTTCATAGCCTGGGAATAATCTATA
GAGACTTAAAACCAGAAAACATACTTCTTGATGAAGAAGGTCACATCAAGTTAACTGATTTTGGCTTAAG
TAAGGAATCTATTGATCATGAGAAGAAGGCTTATTCTTTTTGTGGCACTGTGGAATACATGGCTCCAGAA
GTAGTTAACCGCAGAGGTCACACTCAGAGTGCGGACTGGTGGTCCTTTGGTGTGTTGATGTTTGAAATGC
TCACTGGTACACTACCTTTCCAAGGAAAAGATCGTAAAGAAACAATGACTATGATTCTTAAAGCCAAACT
CGGGATGCCACAGTTTCTGAGTCCTGAAGCCCAGAGTCTTTTACGAATGCTTTTCAAACGGAATCCTGCA
AACAGATTAGGTGCTGGACCAGATGGAGTTGAAGAAATTAAAAGACATTCATTTTTCTCAACAATAGACT
GGAATAAACTATATAGAAGAGAGATTCACCCACCTTTTAAGCCTGCAACTGGCAGACCTGAAGATACATT
TTATTTTGATCCTGAGTTTACTGCAAAAACTCCCAAAGATTCACCGGGCATTCCACCTAGTGCTAACGCA
CATCAGCTTTTTCGGGGGTTTAGTTTTGTTGCTATTACCTCAGATGATGAAAGCCAAGCTATGCAGACAG
TTGGTGTGCATTCAATTGTTCAGCAATTACACAGAAACAGTATTCAGTTTACTGATGGATATGAAGTAAA
AGAGGATATTGGCGTTGGCTCATACTCCGTTTGTAAGAGATGTATACATAAAGCTACAAACATGGAGTTT
GCCGTGAAGATTATTGATAAAAGCAAGAGAGACCCAACAGAAGAGATTGAAATTCTTCTTCGCTATGGAC
AGCATCCAAACATCATTACCCTAAAGGATGTGTATGATGATGGAAAATATGTGTATGTAGTAACAGAACT
TATGAAAGGAGGTGAATTGCTGGATAAGATTCTTAGACAGAAGTTTTTCTCAGAGCGAGAGGCCAGCGCT
GTCCTGTTTACTATAACCAAAACTGTTGAGTATCTTCATGCACAAGGGGTGGTTCACAGAGACTTGAAAC
CTAGCAACATTCTTTATGTGGATGAGTCTGGTAATCCAGAATCTATTCGAATTTGTGATTTTGGCTTTGC
AAAACAACTGAGAGCAGAAAATGGTCTTCTCATGACTCCTTGTTATACTGCAAATTTTGTTGCACCAGAG
GTTTTAAAACGGCAAGGTTATGATGCTGCCTGTGATATATGGAGTCTTGGCGTCCTCCTTTATACAATGC
TTACTGGTTACACTCCATTTGCAAATGGCCCTGATGATACTCCAGAGGAAATACTGGCACGAATAGGTAG
TGGAAAATTCTCACTCAGTGGTGGTTACTGGAATTCTGTTTCAGACACAGCAAAGGACCTGGTGTCAAAG
ATGCTTCATGTAGATCCTCATCAGAGACTGACGGCTGCTCTGGTGCTCAGACATCCTTGGATTGTCCACT
GGGACCAACTACCACAATACCAACTAAACAGACAGGATGCGCCGCATCTCGTAAAGGGTGCCATGGCAGC
TACGTACTCTGCTTTAAACCGCAATCAGTCCCCAGTCTTGGAACCAGTGGGCCGCTCCACTCTTGCTCAG
CGGAGAGGGATTAAAAAAATCACCTCAACAGCCCTGTGA

Translation (712 aa):
MDEPMGEEEINPQTEEGSIKEIAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYA
MKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEE
DVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPE
VVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPA
NRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATGRPEDTFYFDPEFTAKTPKDSPGIPPSANA
HQLFRGFSFVAITSDDESQAMQTVGVHSIVQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEF
AVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASA
VLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPE
VLKRQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSK
MLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAATYSALNRNQSPVLEPVGRSTLAQ
RRGIKKITSTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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