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Report for CCDS85788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85788.1 Public Mus musculus X Dmd 23 108 98 CCDS HistoryNCBI Gene:13405Re-query CCDS DB by CCDS ID:85788.1Re-query CCDS DB by GeneID:13405See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113992.2 ENSMUSP00000109625.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113992.2Link to Ensembl Protein Viewer:ENSMUSP00000109625.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113992Re-query CCDS DB by Protein ID:ENSMUSP00000109625
Original member Current member NCBI NM_001314037.1 NP_001300966.1 Accepted alive Link to Nucleotide Sequence:NM_001314037.1Link to Protein Sequence:NP_001300966.1Re-query CCDS DB by Nucleotide ID:NM_001314037Re-query CCDS DB by Protein ID:NP_001300966Link to BLAST:NP_001300966.1

Chromosomal Locations for CCDS 85788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85048440 85048459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85053971 85054032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85089817 85089891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85105144 85105345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85107580 85107665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85109943 85110100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85139328 85139494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85141726 85141837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85144029 85144165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85149130 85149195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85150213 85150278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85153027 85153185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85177704 85177947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85178699 85178822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85190610 85190702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85197504 85197535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85202471 85202482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGAGGGAACACCTCAAAGGCCACGAGACCCAAACCACTTGTTGGGACCACCCCAAAATGACAGAGCTCT
ACCAGTCTTTAGCTGACCTGAATAATGTCAGGTTCTCCGCGTATAGGACTGCCATGAAGCTCAGAAGGCT
CCAGAAGGCCCTTTGCTTGGATCTCTTGAGCCTGTCAGCTGCATGTGATGCCCTGGACCAGCACAACCTC
AAGCAAAATGACCAGCCCATGGATATCCTGCAGATAATTAACTGTTTGACTACAATTTATGATCGTCTGG
AGCAAGAGCACAACAATCTGGTCAATGTCCCTCTCTGTGTGGATATGTGTCTCAACTGGCTTCTCAATGT
TTATGATACGGGACGAACAGGGAGGATCCGTGTCCTGTCTTTTAAAACTGGCATCATTTCTCTGTGTAAA
GCACACTTGGAAGACAAGTACAGATACCTTTTCAAGCAAGTGGCAAGTTCAACTGGCTTTTGTGACCAGC
GTAGGCTGGGTCTTCTTCTGCATGATTCTATTCAAATCCCAAGACAGTTGGGTGAAGTTGCTTCCTTTGG
GGGCAGTAACATTGAGCCGAGTGTCAGGAGCTGCTTCCAATTTGCCAATAATAAACCTGAGATTGAAGCT
GCTCTCTTCCTTGACTGGATGCGCCTGGAACCCCAGTCTATGGTGTGGCTGCCCGTCTTGCACAGAGTGG
CTGCTGCTGAAACTGCCAAGCATCAAGCCAAGTGTAACATCTGTAAGGAGTGTCCAATCATTGGATTCAG
GTACAGAAGCCTAAAGCATTTTAATTATGACATCTGCCAAAGTTGCTTTTTTTCTGGCCGAGTTGCAAAG
GGCCATAAAATGCACTACCCCATGGTAGAGTATTGCACTCCGACTACATCCGGAGAAGATGTTCGCGACT
TCGCCAAGGTACTAAAAAACAAATTTCGAACCAAAAGGTATTTTGCGAAGCATCCCCGAATGGGCTACCT
GCCAGTGCAGACTGTGTTAGAGGGGGACAACATGGAAACGCCTGCCTCGTCCCCCCAGCTTTCACACGAT
GATACTCATTCACGCATTGAACATTATGCTAGCAGGCTAGCAGAAATGGAAAACAGCAATGGATCTTATC
TAAATGATAGCATCTCTCCTAATGAGAGCATAGATGATGAACATTTGTTAATCCAGCATTACTGCCAAAG
TTTGAACCAGGACTCCCCCCTGAGCCAGCCTCGTAGTCCTGCCCAGATCTTGATTTCCTTAGAGAGTGAG
GAAAGAGGGGAGCTAGAGAGAATCCTAGCAGATCTTGAGGAAGAAAACAGGAATCTGCAAGCAGAATATG
ATCGCCTGAAGCAGCAGCATGAGCATAAAGGCCTGTCTCCACTGCCATCTCCTCCTGAGATGATGCCCAC
CTCTCCTCAGAGTCCCAGGGATGCTGAGCTCATTGCTGAGGCTAAGCTACTGCGCCAACACAAAGGACGC
CTGGAAGCCAGGATGCAAATCCTGGAAGACCACAATAAACAGCTGGAGTCTCAGTTACATAGACTGAGAC
AGCTCCTGGAGCAGCCCCAGGCTGAAGCTAAGGTGAATGGCACCACGGTGTCCTCTCCTTCCACCTCTCT
GCAGAGGTCAGATAGCAGTCAGCCTATGCTGCTCCGAGTGGTTGGCAGTCAAACTTCAGAATCTATGGGT
GAGGAAGATCTTCTGAGTCCTCCCCAGGACACAAGCACAGGGTTAGAAGAAGTGATGGAGCAACTCAACA
ACTCCTTCCCTAGTTCAAGAGGAAGAAATGCCCCCGGAAAGCCAATGAGAGAGGACACAATGTAG

Translation (604 aa):
MREHLKGHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNL
KQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCK
AHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEA
ALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAK
GHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRYFAKHPRMGYLPVQTVLEGDNMETPASSPQLSHD
DTHSRIEHYASRLAEMENSNGSYLNDSISPNESIDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESE
ERGELERILADLEEENRNLQAEYDRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGR
LEARMQILEDHNKQLESQLHRLRQLLEQPQAEAKVNGTTVSSPSTSLQRSDSSQPMLLRVVGSQTSESMG
EEDLLSPPQDTSTGLEEVMEQLNNSFPSSRGRNAPGKPMREDTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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