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Report for CCDS852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
852.1 Public Homo sapiens 1 ST7L 24 110 108 CCDS HistoryNCBI Gene:54879Re-query CCDS DB by CCDS ID:852.1Re-query CCDS DB by GeneID:54879See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343210.11 ENSP00000345312.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343210.11Link to Ensembl Protein Viewer:ENSP00000345312.7Re-query CCDS DB by Nucleotide ID:ENST00000343210Re-query CCDS DB by Protein ID:ENSP00000345312
Original member Current member NCBI NM_138729.4 NP_620057.1 Accepted alive Link to Nucleotide Sequence:NM_138729.4Link to Protein Sequence:NP_620057.1Re-query CCDS DB by Nucleotide ID:NM_138729Re-query CCDS DB by Protein ID:NP_620057Link to BLAST:NP_620057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620057.1 555 Q8TDW4-5 555 100% 0 0

Chromosomal Locations for CCDS 852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112541912 112542090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112550601 112550693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112555868 112556018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112576986 112577088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112578345 112578417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112581992 112582106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112582375 112582472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112583972 112584126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112591525 112591603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112597971 112598086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112600794 112600848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112610841 112611003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112616813 112616895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112618909 112619113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTCCCTGGCCTAA
ACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTGGTTCGT
GGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGACT
GTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGAC
TAATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAG
CCATTTGCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGA
GAAAATGAAACCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAG
GAGCAGAATATAGGAGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTC
AGCTCAGGACCATCAGACCTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAG
AAGGCTTGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATG
ACTGTGCCACTGCATATGTTCTACTGGCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATT
TAAACAGGCACTCAAGGCAGGAGAAACAATTTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAG
CATGAAGCTCAACTGAGGAGAGATACCAATGTACTGGTATATATTAAAAGAAGATTGGCAATGTGTGCAA
GAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATGAGAGATTTGATGAAAGAATTTCCTCCTCTTAC
CATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGAATTACAGGCCTATCCAGATGTTCAGGCA
GTCCTAGCAAAATATGATGATATAAGCCTTCCAAAGTCAGCAGCAATCTGTTACACAGCAGCACTGTTGA
AGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGAGGATTAAGCACAGCAGAAAT
TAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAATATTTATTAGAGATG
AAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTGCCTATGCTTTCT
TTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGTGTACATGGGAAGGCACTTT
TAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGACGGCT
GATAGAGAGCTATTACCTACCTTTCATCATGTTTCTGTTTACCCAAAAAAGGAGCTTCCTTTGTTCATCC
ATTTCACAGCAGGATTTTGCTCTTCTACAGCAATGATAGCCATTCTCACTCACCAGTTTCCTGAAATCAT
GGGTATTTTTGCTAAAGCTGTAAGTATGATCTCAAGGACTTGTGTAGATTATTTGTAA

Translation (555 aa):
MADRGGVGEAAAVGASPASVPGLNPTLGWRERLRAGLAGTGASLWFVAGLGLLYALRIPLRLCENLAAVT
VFLNSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNR
ENETSRQNLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDFLRPSDTVMQ
KAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ
HEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYPDVQA
VLAKYDDISLPKSAAICYTAALLKTRTVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM
KSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETA
DRELLPTFHHVSVYPKKELPLFIHFTAGFCSSTAMIAILTHQFPEIMGIFAKAVSMISRTCVDYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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