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Report for CCDS84961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84961.1 Public Mus musculus 5 Ogfod2 23 108 98 CCDS HistoryNCBI Gene:66627Re-query CCDS DB by CCDS ID:84961.1Re-query CCDS DB by GeneID:66627See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119269.5 ENSMUSP00000112701.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119269.5Link to Ensembl Protein Viewer:ENSMUSP00000112701.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119269Re-query CCDS DB by Protein ID:ENSMUSP00000112701
Original member Current member NCBI NM_001347478.3 NP_001334407.1 Accepted alive Link to Nucleotide Sequence:NM_001347478.3Link to Protein Sequence:NP_001334407.1Re-query CCDS DB by Nucleotide ID:NM_001347478Re-query CCDS DB by Protein ID:NP_001334407Link to BLAST:NP_001334407.1

Chromosomal Locations for CCDS 84961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124112338 124112466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124112789 124112845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124113218 124113331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124113429 124113528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114065 124114192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114479 124114645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124114715 124114730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGACTGCCGCCCAGCGGCGCTTCTGCCGCTGCGCCTGCTTCTGCTCCCAGAACCTGTACGTGGCGC
GCTACGGGCTGCACCTGCGCTTCCGGGACGAGCATCAGCTGCGCCGTGACTACGGCCAGCTCCTGCGCAG
CCGTGGTTGTGTCACCTCCAAGGACTTCCAGCAACTCTTGGAGGAGCTTGAGCAGGAGGTCGGGCGCCGC
CGCAGGCTGGGACAGGAATCGGCTGTCAGGAAGGCTCTCATTGCCAGCTCCTACCACCCGGCTAGGCCTG
AGGTCTACAGCTCACTGCAGGATGCTGCTCTGGCCCCCGAGTTTATGGCTGCAGCTGAATATAGTACGTC
CCCAGGCGCAGATCTTGAGGGCCTTCTCCAGCGTCTGGAGACAGTGTCAGAGGAGAAGCGCATCTATCGG
GTGCCAGTGTTCTCGGCCAAGTTCTGCCAGACCCTGCTGGAAGAGCTGGAGCATTTTGAGCAGTCGGACA
TGCCCAAGGGAAGGCCCAACACCATGAACAACCATGGGACTACGGTGGGGGCTACCTCGACAGTCACCGT
GCCTTTGTGGTCAAGTACGCACTGGGCCAGGACCTGGATCTGGGCTGTCACTACGATAATGCTGAGCTTA
CCCTCAATGTGGCTCTGGGCAAGGACTTCACAGGGGGTGCCCTGTATTTTGGGGGCCTCTTCCAGGCACC
CGCAGCCTTGA

Translation (236 aa):
MATAAQRRFCRCACFCSQNLYVARYGLHLRFRDEHQLRRDYGQLLRSRGCVTSKDFQQLLEELEQEVGRR
RRLGQESAVRKALIASSYHPARPEVYSSLQDAALAPEFMAAAEYSTSPGADLEGLLQRLETVSEEKRIYR
VPVFSAKFCQTLLEELEHFEQSDMPKGRPNTMNNHGTTVGATSTVTVPLWSSTHWARTWIWAVTTIMLSL
PSMWLWARTSQGVPCILGASSRHPQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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